. . . . . . "memory" . . "deregulate in HD" . . "HD" . . "participate in epigenetic processes" . . "genetics" . . "research" . . "have an epigenetic role" . "aim" . . "3.7729318103149883" . "10.9" . "gene deregulation" . . "1.8138261464750172" . "5.3" . "genes involved in HD gene deregulation have an epigenetic role" . . "33.34444814938313" . "100.0" . "participate in epigenetic process" . . "0.20533880903490762" . "0.6" . "web service" . . "4.084458290065767" . "11.8" . "have an epigenetic role" . . "0.06844626967830253" . "0.2" . "life sciences" . . "100.0" . "2.662090003490448" . "chromatin" . . "5.430210325047801" . "14.2" . "HD chromatin analysis" . . "10.095824777549623" . "29.5" . "http" . . "3.530633437175493" . "10.2" . "deregulation" . . "11.586998087954111" . "30.3" . "analysis" . . "2.076843198338526" . "6.0" . "http" . . "4.053537284894838" . "10.6" . "chromatin data interpretation" . . "9.68514715947981" . "28.3" . "HD gene deregulation" . . "25.735797399041754" . "75.2" . "deregulate in HD" . . "16.1533196440794" . "47.2" . "earth sciences" . . "67.21141059758304" . "1.1682264804840088" . "epigenetic role" . . "6.536618754277893" . "19.1" . "research object" . . "5.6125941136208075" . "16.4" . "Animal" . . "Human interest/Animal" . "geochemistry" . . "32.78858940241696" . "0.5699106454849243" . "Genoa" . . "20.976116303219108" . "60.6" . "epigenetic" . . "2.942194530979578" . "8.5" . "chromatin" . . "4.7767393561786085" . "13.8" . "workflow" . . "3.6711281070745696" . "9.6" . "chromatin data interpretation." . . "4.268089363121041" . "12.8" . "geology" . . "67.21141059758304" . "1.1682264804840088" . "role" . . "5.469020422291451" . "15.8" . "information" . . "2.872966424368294" . "8.3" . "system" . . "3.703703703703704" . "10.7" . "web service" . . "4.7036328871892925" . "12.3" . "earth sciences" . . "32.78858940241696" . "0.5699106454849243" . "research" . . "4.091778202676864" . "10.7" . "research" . . "4.534440983039114" . "13.1" . "HD" . . "12.313575525812622" . "32.2" . "role" . . "5.621414913957935" . "14.7" . "chromatin analysis" . . "1.0609171800136894" . "3.1" . "object" . . "4.130019120458891" . "10.8" . "workflow" . . "3.0806507442021465" . "8.9" . "interpretation" . . "2.492211838006231" . "7.2" . "Science and technology" . . "Science and technology" . "life sciences (general)" . . "100.0" . "2.662090003490448" . "epigenetic process" . . "17.796030116358658" . "52.0" . "anni web services" . . "5.236139630390144" . "15.3" . "HD" . . "12.253374870197302" . "35.4" . "Genes deregulated in HD, are participating in epigenetic processes" . . "33.34444814938313" . "100.0" . "Genoa" . . "26.080305927342256" . "68.2" . "gene" . . "14.952198852772467" . "39.1" . "deregulation" . . "10.107303565247491" . "29.2" . "

This research object, was created in order to further analyse and interpret the results from the research object http://sandbox.rohub.org/rodl/ROs/HD_chromatin_analysis/  (HD chromatin analysis). The workflows in this research object are using the anni web services, implemented by the Biosemantics group.

" . . "29.043014338112705" . "87.1" . "data" . . "3.365200764818356" . "8.8" . "Economic policy" . . "Economy, business and finance/Economy/Economic policy" . "gene" . . "13.326410522672205" . "38.5" . . . "2014-02-26T14:16:20.355+01:00" . . . "81201"^^ . "https://api.rohub.org/api/ros/f84d00ef-47b2-40b3-af26-099ed7e82f5b/crate/download/" . . "2014-02-21 13:36:32.163000+00:00" . "2025-10-18 11:54:49.104646+00:00" . "2014-02-21 13:36:32.163000+00:00" . "

This research object, was created in order to further analyse and interpret the results from the research object http://sandbox.rohub.org/rodl/ROs/HD_chromatin_analysis/  (HD chromatin analysis). The workflows in this research object are using the anni web services, implemented by the Biosemantics group.

" . "application/ld+json" . . . . . "https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b" . . "chromatin data interpretation" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "Eleni Mina. \"chromatin data interpretation.\" ROHub. Feb 21 ,2014. https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b." . . . . . . "data_interpretation" . . . . "30787"^^ . "https://api.rohub.org/api/resources/2ea2f7b6-1c15-454f-b62a-e7656bb81db4/download/" . . "2014-02-25 16:10:46.463000+00:00" . "2022-03-25 16:50:57.659485+00:00" . "This workflow lists all IDs and descriptions of the predefined concept set" . . "List Predefined Concept Sets" . "2014-02-25 16:10:46.463000+00:00" . . . . . "69369"^^ . "https://api.rohub.org/api/resources/473e57ab-4056-427a-a8d9-b2c62e9b34d4/download/" . . "2014-02-26 13:14:06.663000+00:00" . "2022-03-25 16:51:01.271983+00:00" . "This workflow takes two concept ids as input and returns the top ranking \"B\" concepts according to Swanson's ABC model of discovery, where the relationships AB and BC are known and reported in the literature, and the implicit relationship AC is a putative new discovery. It might also be the case that AC is already known. In that case AC does not represent a new discovery but will still be returned (see workflow example values). The B concepts are returned sorted on the percentage of the contributions of the individual concepts to the coherence score (the average of the inner product scores of all possible concept pairs within the group).\r\nThis workflow can be used together with other workflows in this pack: http://www.myexperiment.org/packs/282 for functional gene and SNP annotation and knowledge discovery." . . "Explain concept scores" . "2014-02-26 13:14:06.663000+00:00" . . . . . "63"^^ . "https://api.rohub.org/api/resources/5b168f58-186e-4335-8079-2c917c3173e3/download/" . . "2014-02-25 16:03:44.993000+00:00" . "2022-03-25 16:50:58.525827+00:00" . "text/plain" . . "hypothesis.txt" . "2014-02-25 16:03:44.993000+00:00" . . . . . "203555"^^ . "https://api.rohub.org/api/resources/7f5b48a1-083d-4891-b311-b4627ceaa7ab/download/" . . "2014-02-25 16:06:54.756000+00:00" . "2022-03-25 16:51:00.400167+00:00" . "This workflow annotates a comma separated gene list with a predefined concept set as for example Biological processes or Disease/syndrome. To obtain the particular id for each concept set (e.g. \"5\" for Biological processes), the workflow listPredefinedConceptSets needs to run first. The workflow is using the anni web services" . . "Annotate a gene list with Biological processes" . "2014-02-25 16:06:54.756000+00:00" . . . . . "188023"^^ . "https://api.rohub.org/api/resources/840546e9-eecd-455e-b3f7-b1893b29e083/download/" . . "2014-02-25 16:12:14.228000+00:00" . "2022-03-25 16:50:56.779303+00:00" . "This workflow can prioritize genes that are related to a specific concept, e.g. HTT. In order to obtain the concept id of the term that is going to be matched against the gene list, the workflow Get concept suggestions from term, needs to run first. matchConceptProfileList: the gene list we want to match (order) against a particular concept queryConceptProfileList: the concept (or gene list) we want to match the query against" . . "Prioritize gene list related to a concept /list of concepts" . "2014-02-25 16:12:14.228000+00:00" . . . . . "39476"^^ . "https://api.rohub.org/api/resources/cb796e52-689f-4e9e-8842-09612588af02/download/" . . "2014-02-25 16:04:13.823000+00:00" . "2022-03-25 16:50:55.921582+00:00" . "Sketch of the workflows and their explanation, for data interpretation, plus the connection to the output from the RO for chromatin analysis" . "image/png" . . "workflow sketch data interpretation" . "2014-02-25 16:04:13.823000+00:00" . . . . . "41692"^^ . "https://api.rohub.org/api/resources/ccd9b022-3e2d-422b-a5c5-1e12af73b5c7/download/" . . "2014-02-25 16:09:23.429000+00:00" . "2022-03-25 16:50:59.349734+00:00" . "This workflow suggests concept ids that match the query term. The user can run this workflow with any term of interest as for example \"human\", \"htt\", \"Transcription\" etc, and will get suggestions for concept ids together with descriptions. Then can choose the concept id that matches the best to her/his needs and use it to the rest of the CPA workflows" . . "Get concept suggestions from term" . "2014-02-25 16:09:23.429000+00:00" . . . . . "67"^^ . "https://api.rohub.org/api/resources/f97e8e56-b0de-4fda-9e37-352412aa2d3c/download/" . . "2014-02-25 16:03:12.283000+00:00" . "2022-03-25 16:50:54.643219+00:00" . "text/plain" . . "conclusions.txt" . "2014-02-25 16:03:12.283000+00:00" . . . . . . . "Eleni Mina" . . "Eleni Mina" . . "service-account-enrichment" . . "service-account-generation-service" . . . "2025-11-11T16:44:41.685+01:00"^^ . . . "chromatin data interpretation" . "RSA" . "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEA4pPaESKwmC6l37P86K6TNLq6yeQtc7m9CvcqauLs/1FC0viHvQnFBgxj0a+loPDv/Egwe6OqFpa0iW9Ypnyz9YPoh+pxbRXonbuMOb+8Ry9hXZ+TEKfWjhjVDGEaClwfRwglh2HI/xfV4CD9AgvDOEoZQiyta8a90PYwJ3G6e70oCHTn61+OWTkI9KRYHOYgg3btdy2Z7q/30PTFawb2ZT5aIfIJYobUYv2a7yhtcqWCHZeKv0bxGnRjTFNx1rscBMlLJSzvRtpQc1cCRVEPFZHo1adaXCI9tGvn4cxeNQ96y8dxkN1XhpaJairde+23MDzf42Oe97KG2HYzKiyVnQIDAQAB" . "EIKNa9Y+O8uKpUVpIYZzJMctG4qoNYqA0nx05rKnYAXcGqsbPVWOXG5nlpOu7hxOmiQcYwspa0sxzv5s+A+gKgVn/tpuJ0m1vs0hGLUab0eQ8mPsU3mYKHhy2tY6hrPa7s9iSXGoO5DyWUiwkM9yWz6Bn4rnRUSzBjxIi5vwFsjOb9TObPI6/UMHfiwAhNi885RbC/AqpgJSsGFtK1G4X2qvh5oQuX5/Zoo481HA+lCswsLTy+meOIRaSti+zzmc90k4Xi00GqXhFZL89sswV4Foo8sqypInCL1q4mNzLfT7qs0zOd4GdOySj97lu4ZBOGL1XWR1aZHT9YAR/vnHEw==" . . .