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Mina. "chromatin data interpretation." ROHub. Feb 21 ,2014. https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b. https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/folders/58396a63-1246-4c59-864e-430d4018e84d http://schema.org/hasPart https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/2ea2f7b6-1c15-454f-b62a-e7656bb81db4 https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/folders/58396a63-1246-4c59-864e-430d4018e84d http://schema.org/hasPart https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/473e57ab-4056-427a-a8d9-b2c62e9b34d4 https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/folders/58396a63-1246-4c59-864e-430d4018e84d http://schema.org/hasPart https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/7f5b48a1-083d-4891-b311-b4627ceaa7ab https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/folders/58396a63-1246-4c59-864e-430d4018e84d http://schema.org/hasPart 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https://www.google.com/accounts/o8/id?id=AItOawlLcpRhy-5MtgIVFxuwLWcFFys5ZTC7w2c https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/2ea2f7b6-1c15-454f-b62a-e7656bb81db4 http://schema.org/contentSize 30787 https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/2ea2f7b6-1c15-454f-b62a-e7656bb81db4 http://schema.org/contentUrl https://api.rohub.org/api/resources/2ea2f7b6-1c15-454f-b62a-e7656bb81db4/download/ https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/2ea2f7b6-1c15-454f-b62a-e7656bb81db4 http://schema.org/creator https://www.google.com/accounts/o8/id?id=AItOawlLcpRhy-5MtgIVFxuwLWcFFys5ZTC7w2c https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/2ea2f7b6-1c15-454f-b62a-e7656bb81db4 http://schema.org/dateCreated 2014-02-25 16:10:46.463000+00:00 https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/2ea2f7b6-1c15-454f-b62a-e7656bb81db4 http://schema.org/dateModified 2022-03-25 16:50:57.659485+00:00 https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/2ea2f7b6-1c15-454f-b62a-e7656bb81db4 http://schema.org/description This workflow lists all IDs and descriptions of the predefined concept set https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/2ea2f7b6-1c15-454f-b62a-e7656bb81db4 http://schema.org/license https://choosealicense.com/no-permission/ https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/2ea2f7b6-1c15-454f-b62a-e7656bb81db4 http://schema.org/name List Predefined Concept Sets https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/2ea2f7b6-1c15-454f-b62a-e7656bb81db4 http://schema.org/sdDatePublished 2014-02-25 16:10:46.463000+00:00 https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/2ea2f7b6-1c15-454f-b62a-e7656bb81db4 http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://purl.org/wf4ever/wf4ever#Resource 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https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/473e57ab-4056-427a-a8d9-b2c62e9b34d4 http://schema.org/creator https://www.google.com/accounts/o8/id?id=AItOawlLcpRhy-5MtgIVFxuwLWcFFys5ZTC7w2c https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/473e57ab-4056-427a-a8d9-b2c62e9b34d4 http://schema.org/dateCreated 2014-02-26 13:14:06.663000+00:00 https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/473e57ab-4056-427a-a8d9-b2c62e9b34d4 http://schema.org/dateModified 2022-03-25 16:51:01.271983+00:00 https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/473e57ab-4056-427a-a8d9-b2c62e9b34d4 http://schema.org/description This workflow takes two concept ids as input and returns the top ranking "B" concepts according to Swanson's ABC model of discovery, where the relationships AB and BC are known and reported in the literature, and the implicit relationship AC is a putative new discovery. It might also be the case that AC is already known. In that case AC does not represent a new discovery but will still be returned (see workflow example values). The B concepts are returned sorted on the percentage of the contributions of the individual concepts to the coherence score (the average of the inner product scores of all possible concept pairs within the group). This workflow can be used together with other workflows in this pack: http://www.myexperiment.org/packs/282 for functional gene and SNP annotation and knowledge discovery. https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/473e57ab-4056-427a-a8d9-b2c62e9b34d4 http://schema.org/license https://choosealicense.com/no-permission/ https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/473e57ab-4056-427a-a8d9-b2c62e9b34d4 http://schema.org/name Explain concept scores https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/473e57ab-4056-427a-a8d9-b2c62e9b34d4 http://schema.org/sdDatePublished 2014-02-26 13:14:06.663000+00:00 https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/473e57ab-4056-427a-a8d9-b2c62e9b34d4 http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://purl.org/wf4ever/wf4ever#Resource https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/473e57ab-4056-427a-a8d9-b2c62e9b34d4 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https://www.google.com/accounts/o8/id?id=AItOawlLcpRhy-5MtgIVFxuwLWcFFys5ZTC7w2c https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/5b168f58-186e-4335-8079-2c917c3173e3 http://schema.org/dateCreated 2014-02-25 16:03:44.993000+00:00 https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/5b168f58-186e-4335-8079-2c917c3173e3 http://schema.org/dateModified 2022-03-25 16:50:58.525827+00:00 https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/5b168f58-186e-4335-8079-2c917c3173e3 http://schema.org/encodingFormat text/plain https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/5b168f58-186e-4335-8079-2c917c3173e3 http://schema.org/license https://choosealicense.com/no-permission/ https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/5b168f58-186e-4335-8079-2c917c3173e3 http://schema.org/name hypothesis.txt https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/5b168f58-186e-4335-8079-2c917c3173e3 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203555 https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/7f5b48a1-083d-4891-b311-b4627ceaa7ab http://schema.org/contentUrl https://api.rohub.org/api/resources/7f5b48a1-083d-4891-b311-b4627ceaa7ab/download/ https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/7f5b48a1-083d-4891-b311-b4627ceaa7ab http://schema.org/creator https://www.google.com/accounts/o8/id?id=AItOawlLcpRhy-5MtgIVFxuwLWcFFys5ZTC7w2c https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/7f5b48a1-083d-4891-b311-b4627ceaa7ab http://schema.org/dateCreated 2014-02-25 16:06:54.756000+00:00 https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/7f5b48a1-083d-4891-b311-b4627ceaa7ab http://schema.org/dateModified 2022-03-25 16:51:00.400167+00:00 https://w3id.org/ro-id/f84d00ef-47b2-40b3-af26-099ed7e82f5b/resources/7f5b48a1-083d-4891-b311-b4627ceaa7ab http://schema.org/description This workflow annotates a comma separated gene list with a predefined concept set as for example Biological processes or Disease/syndrome. To obtain the particular id for each concept set (e.g. "5" for Biological processes), the workflow listPredefinedConceptSets needs to run first. 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