[ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/pubinfo", "@graph": [ { "@id": "https://orcid.org/0000-0002-1267-0234", "http://xmlns.com/foaf/0.1/name": [ { "@value": "Tobias Kuhn" } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U", "http://purl.org/dc/terms/created": [ { "@value": "2025-11-06T08:45:04.817Z", "@type": "http://www.w3.org/2001/XMLSchema#dateTime" } ], "http://purl.org/dc/terms/creator": [ { "@id": "https://orcid.org/0000-0002-1267-0234" } ], "http://purl.org/dc/terms/license": [ { "@id": "https://creativecommons.org/licenses/by/4.0/" } ], "http://purl.org/nanopub/x/supersedes": [ { "@id": "https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs" } ], "http://purl.org/nanopub/x/wasCreatedAt": [ { "@id": "https://nanodash.knowledgepixels.com/" } ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Expressing an association between an organism and a nucleotide sequence (extended)" } ], "http://www.w3.org/ns/prov#wasDerivedFrom": [ { "@id": "http://purl.org/np/RACPgaoRptG1W-IZpNk6r-MBSMgcdZlaMrAtli9GkmKaE" } ], "https://w3id.org/np/o/ntemplate/wasCreatedFromProvenanceTemplate": [ { "@id": "http://purl.org/np/RANwQa4ICWS5SOjw7gp99nBpXBasapwtZF1fIM3H2gYTM" } ], "https://w3id.org/np/o/ntemplate/wasCreatedFromPubinfoTemplate": [ { "@id": "https://w3id.org/np/RA0J4vUn_dekg-U1kK3AOEt02p9mT2WO03uGxLDec1jLw" }, { "@id": "https://w3id.org/np/RARW4MsFkHuwjycNElvEVtuMjpf4yWDL10-0C5l2MqqRQ" }, { "@id": "https://w3id.org/np/RAoTD7udB2KtUuOuAe74tJi1t3VzK0DyWS7rYVAq1GRvw" }, { "@id": "https://w3id.org/np/RAukAcWHRDlkqxk7H2XNSegc1WnHI569INvNr-xdptDGI" } ], "https://w3id.org/np/o/ntemplate/wasCreatedFromTemplate": [ { "@id": "https://w3id.org/np/RA1XuAdO6LOtlPJgWiytJHFuK4BFHjQK5x7d9FVymzFnc" } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/sig", "http://purl.org/nanopub/x/hasAlgorithm": [ { "@value": "RSA" } ], "http://purl.org/nanopub/x/hasPublicKey": [ { "@value": "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQD4Wj537OijfOWVtsHMznuXKISqBhtGDQZfdO6pbb4hg9EHMcUFGTLbWaPrP783PHv8HMAAPjvEkHLaOHMIknqhaIa5236lfBO3r+ljVdYBElBcLvROmwG+ZGtmPNZf7lMhI15xf5TfoaSa84AFRd5J2EXekK6PhaFQhRm1IpSYtwIDAQAB" } ], "http://purl.org/nanopub/x/hasSignature": [ { "@value": "7zizA+9r3gQf5sEZhyJN4qLZBwJPv21heDLqgSPELUVu/xqsylf15d6m1lMhTHoNT5jYeW5M0BtiBLU5/DcME4SHJEbv1Biy3ChyZUbPQRJClKrzNN7kRpmjAqQQBKAhWmnkjKVtJPh3V30NQVrAgrQuq022ahgEdlY/TthyOqA=" } ], "http://purl.org/nanopub/x/hasSignatureTarget": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U" } ], "http://purl.org/nanopub/x/signedBy": [ { "@id": "https://orcid.org/0000-0002-1267-0234" } ] } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/provenance", "@graph": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/assertion", "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://orcid.org/0000-0002-1267-0234" } ] } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/Head", "@graph": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U", "http://www.nanopub.org/nschema#hasAssertion": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/assertion" } ], "http://www.nanopub.org/nschema#hasProvenance": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/provenance" } ], "http://www.nanopub.org/nschema#hasPublicationInfo": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/pubinfo" } ], "@type": [ "http://www.nanopub.org/nschema#Nanopublication" ] } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/assertion", "@graph": [ { "@id": "http://purl.obolibrary.org/obo/BTO_0000487", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "fruit body" } ] }, { "@id": "http://purl.obolibrary.org/obo/BTO_0001171", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "spore" } ] }, { "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "is an instance of" } ] }, { "@id": "http://www.w3.org/2000/01/rdf-schema#comment", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "has the free-text comment" } ] }, { "@id": "http://www.w3.org/2002/07/owl#sameAs", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "is the same as" } ] }, { "@id": "http://www.w3.org/2003/01/geo/wgs84_pos#location", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "has the location" } ] }, { "@id": "https://w3id.org/biolink/vocab/object", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "links the organism to the nucleotide sequence" } ] }, { "@id": "https://w3id.org/biolink/vocab/predicate", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "refers to the relation" } ] }, { "@id": "https://w3id.org/biolink/vocab/subject", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "refers to" } ] }, { "@id": "https://w3id.org/biolink/vocab/timepoint", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "has the time stamp - points to the date and time associated with this relation or organism (e.g. date of collection); if occurrence URI is given, this is redundant and does not need to be filled in" } ] }, { "@id": "https://w3id.org/kpxl/biodiv/terms/OrganismToNucleotideSequenceAssociation", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "an association of an organism to a nucleotide sequence" } ] }, { "@id": "https://w3id.org/kpxl/biodiv/terms/hasAssembledNucleotideSequence", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "assembled nucleotide sequence" } ] }, { "@id": "https://w3id.org/kpxl/biodiv/terms/hasIsolationProtocol", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "has the isolation protocol" } ] }, { "@id": "https://w3id.org/kpxl/biodiv/terms/hasLifeCycleStage", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "has the life cycle stage" } ] }, { "@id": "https://w3id.org/kpxl/biodiv/terms/hasLocationCoordinates", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "has the location coordinates - points to the location coordinates associated with this relation or organism (e.g. place of collection); if occurrence URI is given, this is redundant and does not need to be filled in" } ] }, { "@id": "https://w3id.org/kpxl/biodiv/terms/hasObservedNucleotideSequence", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "observed nucleotide sequence" } ] }, { "@id": "https://w3id.org/kpxl/biodiv/terms/hasOccurrence", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "has the occurrence - links an organism to a record of a specific occurrence of it" } ] }, { "@id": "https://w3id.org/kpxl/biodiv/terms/hasSampleType", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "has the sample type" } ] }, { "@id": "https://w3id.org/kpxl/biodiv/terms/hasSequencedNucleotideSequence", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "sequenced nucleotide sequence" } ] }, { "@id": "https://w3id.org/kpxl/biodiv/terms/hasStrainID", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "has the strain ID" } ] }, { "@id": "https://w3id.org/kpxl/biodiv/terms/hasTaxonConceptDefinition", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "is used as defined in" } ] }, { "@id": "https://w3id.org/kpxl/biodiv/terms/hasTaxonName", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "has the name - links a taxon usage to a taxon name" } ] }, { "@id": "https://w3id.org/kpxl/biodiv/terms/isIdentifiedByNuceotideSequence", "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "identified by nucleotide sequence" } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/assertion", "http://purl.org/dc/terms/description": [ { "@value": "

Such a nanopublication expresses an association between an organism (normally identified as belonging to a certain taxon concept) and a nucleotide sequence (that can correspond to a gene or subunit of a gene), for example expressing that Sequence ID (INSDC / Genbank accession number or BOLD Process ID) identifies Organism X as belonging to a Taxon Concept Y.

" } ], "@type": [ "https://w3id.org/np/o/ntemplate/AssertionTemplate" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Expressing an association between an organism and a nucleotide sequence (extended)" } ], "https://w3id.org/np/o/ntemplate/hasDefaultProvenance": [ { "@id": "http://purl.org/np/RAYfEAP8KAu9qhBkCtyq_hshOvTAJOcdfIvGhiGwUqB-M" } ], "https://w3id.org/np/o/ntemplate/hasNanopubLabelPattern": [ { "@value": "Organism of ${taxonname} - ${relation} - ${nucleotidesequence}" } ], "https://w3id.org/np/o/ntemplate/hasStatement": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st00" }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st05" }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st09" }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st10" }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st11" }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st12" }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st20" }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st25" }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st30" }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st80" }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st81" }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st82" }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st83" }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st85" }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st86" }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st87" }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st90" } ], "https://w3id.org/np/o/ntemplate/hasTag": [ { "@value": "Biodiversity" } ], "https://w3id.org/np/o/ntemplate/hasTargetNanopubType": [ { "@id": "https://w3id.org/kpxl/biodiv/terms/BiodivNanopub" } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st00", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/kpxl/biodiv/terms/OrganismToNucleotideSequenceAssociation" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/association" } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st05", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/relation" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "https://w3id.org/biolink/vocab/predicate" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/association" } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st09", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/organism" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "https://w3id.org/biolink/vocab/subject" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/association" } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st10", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/taxon" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/organism" } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st11", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/taxonname" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "https://w3id.org/kpxl/biodiv/terms/hasTaxonName" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/taxon" } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st12", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/taxondef" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "https://w3id.org/kpxl/biodiv/terms/hasTaxonConceptDefinition" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/taxon" } ], "@type": [ "https://w3id.org/np/o/ntemplate/OptionalStatement" ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st20", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/lifecyclestage" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "https://w3id.org/kpxl/biodiv/terms/hasLifeCycleStage" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/organism" } ], "@type": [ "https://w3id.org/np/o/ntemplate/OptionalStatement" ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st25", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/occurrence" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "https://w3id.org/kpxl/biodiv/terms/hasOccurrence" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/organism" } ], "@type": [ "https://w3id.org/np/o/ntemplate/OptionalStatement" ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st30", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/organismAlt" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "http://www.w3.org/2002/07/owl#sameAs" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/organism" } ], "@type": [ "https://w3id.org/np/o/ntemplate/OptionalStatement", "https://w3id.org/np/o/ntemplate/RepeatableStatement" ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st80", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/location" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "http://www.w3.org/2003/01/geo/wgs84_pos#location" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/association" } ], "@type": [ "https://w3id.org/np/o/ntemplate/OptionalStatement" ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st81", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/coordinates" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "https://w3id.org/kpxl/biodiv/terms/hasLocationCoordinates" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/association" } ], "@type": [ "https://w3id.org/np/o/ntemplate/OptionalStatement" ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st82", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/timepoint" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "https://w3id.org/biolink/vocab/timepoint" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/association" } ], "@type": [ "https://w3id.org/np/o/ntemplate/OptionalStatement" ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st83", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/sampleType" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "https://w3id.org/kpxl/biodiv/terms/hasSampleType" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/association" } ], "@type": [ "https://w3id.org/np/o/ntemplate/OptionalStatement" ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st85", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/nucleotidesequence" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "https://w3id.org/biolink/vocab/object" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/association" } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st86", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/strainid" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "https://w3id.org/kpxl/biodiv/terms/hasStrainID" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/association" } ], "@type": [ "https://w3id.org/np/o/ntemplate/OptionalStatement", "https://w3id.org/np/o/ntemplate/RepeatableStatement" ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st87", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/isolationProtocol" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "https://w3id.org/kpxl/biodiv/terms/hasIsolationProtocol" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/association" } ], "@type": [ "https://w3id.org/np/o/ntemplate/OptionalStatement" ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/st90", "http://www.w3.org/1999/02/22-rdf-syntax-ns#object": [ { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/comment" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#predicate": [ { "@id": "http://www.w3.org/2000/01/rdf-schema#comment" } ], "http://www.w3.org/1999/02/22-rdf-syntax-ns#subject": [ { "@id": "https://w3id.org/np/o/ntemplate/ASSERTION" } ], "@type": [ "https://w3id.org/np/o/ntemplate/OptionalStatement" ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/association", "@type": [ "https://w3id.org/np/o/ntemplate/IntroducedResource", "https://w3id.org/np/o/ntemplate/LocalResource" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "this association" } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/comment", "@type": [ "https://w3id.org/np/o/ntemplate/LongLiteralPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "short explanation related to the above statement" } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/coordinates", "@type": [ "https://w3id.org/np/o/ntemplate/LiteralPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "lat/long e.g. '+47.37+8.54' or with altitude '+47.37+8.54+410.5'" } ], "https://w3id.org/np/o/ntemplate/hasRegex": [ { "@value": "[+-][0-9]+(\\.[0-9]+)?[+-][0-9]+(\\.[0-9]+)?([+-][0-9]+(\\.[0-9]+)?)?" } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/isolationProtocol", "@type": [ "https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "DOI of isolation protocol document" } ], "https://w3id.org/np/o/ntemplate/hasRegex": [ { "@value": "https://doi\\.org/.+" } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/lifecyclestage", "@type": [ "https://w3id.org/np/o/ntemplate/RestrictedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "select the life cycle stage of the organism; leave blank if unknown" } ], "https://w3id.org/np/o/ntemplate/possibleValue": [ { "@id": "http://purl.obolibrary.org/obo/BTO_0000487" }, { "@id": "http://purl.obolibrary.org/obo/BTO_0001171" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFrom": [ { "@id": "http://purl.org/np/RAVZS2MV-siFEqsgFTtgSoKA5qJkp7r1nM_n-MqPkvgdE" } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/location", "@type": [ "https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "GeoNames location ID (https://sws.geonames.org/.../)" } ], "https://w3id.org/np/o/ntemplate/hasRegex": [ { "@value": "https://sws\\.geonames\\.org/[0-9]+/" } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/nucleotidesequence", "@type": [ "https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "INSDC/Genbank # (e.g. https://www.ncbi.nlm.nih.gov/nuccore/...)" } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/occurrence", "@type": [ "https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "occurrence URI from GBIF (https://www.gbif.org/occurrence/...) or iDigBio, BOLD, PlutoF, etc." } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/organism", "@type": [ "https://w3id.org/np/o/ntemplate/LocalResource" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "the organism" } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/organismAlt", "@type": [ "https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "any existing URI identifier of organism (e.g. of digital collection specimen or observation in nature)" } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/relation", "@type": [ "https://w3id.org/np/o/ntemplate/RestrictedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "the relation between the organism and the nucleotide sequence" } ], "https://w3id.org/np/o/ntemplate/hasDefaultValue": [ { "@id": "https://w3id.org/kpxl/biodiv/terms/hasObservedNucleotideSequence" } ], "https://w3id.org/np/o/ntemplate/possibleValue": [ { "@id": "https://w3id.org/kpxl/biodiv/terms/hasAssembledNucleotideSequence" }, { "@id": "https://w3id.org/kpxl/biodiv/terms/hasObservedNucleotideSequence" }, { "@id": "https://w3id.org/kpxl/biodiv/terms/hasSequencedNucleotideSequence" }, { "@id": "https://w3id.org/kpxl/biodiv/terms/isIdentifiedByNuceotideSequence" } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/sampleType", "@type": [ "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "choose the type of sample" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi": [ { "@value": "https://www.ebi.ac.uk/ols/api/select?ontology=uberon&q=" } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/taxon", "@type": [ "https://w3id.org/np/o/ntemplate/LocalResource" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "the taxon concept" } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/taxonname", "@type": [ "https://w3id.org/np/o/ntemplate/GuidedChoicePlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "search and select from list (if not found, paste identifying URI from IPNI, MycoBank, Index Fungorum, or Zoobank)" } ], "https://w3id.org/np/o/ntemplate/possibleValuesFromApi": [ { "@value": "https://vodex.petapico.org/nidx/query?rows=100&q=label:" } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/taxondef", "@type": [ "https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "DOI (https://doi.org/...) or treatment ID (https://treatment.plazi.org/id/...)" } ], "https://w3id.org/np/o/ntemplate/hasRegex": [ { "@value": "(https://doi\\.org/|https://treatment\\.plazi\\.org/id/).+" } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/timepoint", "@type": [ "https://w3id.org/np/o/ntemplate/LiteralPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "time expressed in XSD DateTime format, e.g. '2023-03-30T22:17:11Z'" } ], "https://w3id.org/np/o/ntemplate/hasRegex": [ { "@value": "-?([1-9]\\d\\d\\d+|0\\d\\d\\d)-(0[1-9]|1[0-2])-(0[1-9]|[12]\\d|3[01])T(([01]\\d|2[0-3]):[0-5]\\d:[0-5]\\d(\\.\\d+)?|24:00:00(\\.0+)?)(Z|[+-](0\\d|1[0-4]):[0-5]\\d)?" } ] }, { "@id": "https://w3id.org/np/RAInHt3ngomYe6YObDAZwqYKtWdi12RFuaaJ5I8G6DM5U/strainid", "@type": [ "https://w3id.org/np/o/ntemplate/LiteralPlaceholder" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Strain ID string (e.g. DSMZ, ATCC)" } ] } ] } ]