. . . . "fruit body" . "spore" . "is an instance of" . "has the free-text comment" . "is the same as" . "has the location" . "links the organism to the nucleotide sequence" . "refers to the relation" . "refers to" . "has the time stamp - points to the date and time associated with this relation or organism (e.g. date of collection); if occurrence URI is given, this is redundant and does not need to be filled in" . "an association of an organism to a nucleotide sequence" . "assembled nucleotide sequence" . "has the isolation protocol" . "has the life cycle stage" . "has the location coordinates - points to the location coordinates associated with this relation or organism (e.g. place of collection); if occurrence URI is given, this is redundant and does not need to be filled in" . "observed nucleotide sequence" . "has the occurrence - links an organism to a record of a specific occurrence of it" . "has the sample type" . "sequenced nucleotide sequence" . "has the strain ID" . "is used as defined in" . "has the name - links a taxon usage to a taxon name" . "identified by nucleotide sequence" . "

Such a nanopublication expresses an association between an organism (normally identified as belonging to a certain taxon concept) and a nucleotide sequence (that can correspond to a gene or subunit of a gene), for example expressing that Sequence ID (INSDC / Genbank accession number or BOLD Process ID) identifies Organism X as belonging to a Taxon Concept Y.

" . . "Expressing an association between an organism and a nucleotide sequence (extended)" . . "Organism of ${taxonname} - ${relation} - ${nucleotidesequence}" . . . . . . . . . . . . . . . . . . "Biodiversity" . . . . "this association" . . "short explanation related to the above statement" . . "lat/long e.g. '+47.37+8.54' or with altitude '+47.37+8.54+410.5'" . "[+-][0-9]+(\\.[0-9]+)?[+-][0-9]+(\\.[0-9]+)?([+-][0-9]+(\\.[0-9]+)?)?" . . "DOI of isolation protocol document" . "https://doi\\.org/.+" . . "select the life cycle stage of the organism; leave blank if unknown" . . . . . "GeoNames location ID (https://sws.geonames.org/.../)" . "https://sws\\.geonames\\.org/[0-9]+/" . . "INSDC/Genbank # (e.g. https://www.ncbi.nlm.nih.gov/nuccore/...)" . . "occurrence URI from GBIF (https://www.gbif.org/occurrence/...) or iDigBio, BOLD, PlutoF, etc." . . "the organism" . . "any existing URI identifier of organism (e.g. of digital collection specimen or observation in nature)" . . "the relation between the organism and the nucleotide sequence" . . . . . . . "choose the type of sample" . "https://www.ebi.ac.uk/ols/api/select?ontology=uberon&q=" . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . "Strain ID string (e.g. DSMZ, ATCC)" . . "the taxon concept" . . "DOI (https://doi.org/...) or treatment ID (https://treatment.plazi.org/id/...)" . "(https://doi\\.org/|https://treatment\\.plazi\\.org/id/).+" . . "search and select from list (if not found, paste identifying URI from IPNI, MycoBank, Index Fungorum, or Zoobank)" . "https://vodex.petapico.org/nidx/query?rows=100&q=label:" . . "time expressed in XSD DateTime format, e.g. '2023-03-30T22:17:11Z'" . "-?([1-9]\\d\\d\\d+|0\\d\\d\\d)-(0[1-9]|1[0-2])-(0[1-9]|[12]\\d|3[01])T(([01]\\d|2[0-3]):[0-5]\\d:[0-5]\\d(\\.\\d+)?|24:00:00(\\.0+)?)(Z|[+-](0\\d|1[0-4]):[0-5]\\d)?" . . "Tobias Kuhn" . "2025-11-06T08:45:04.817Z"^^ . . . . . "Expressing an association between an organism and a nucleotide sequence (extended)" . . . . . . . . "RSA" . "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQD4Wj537OijfOWVtsHMznuXKISqBhtGDQZfdO6pbb4hg9EHMcUFGTLbWaPrP783PHv8HMAAPjvEkHLaOHMIknqhaIa5236lfBO3r+ljVdYBElBcLvROmwG+ZGtmPNZf7lMhI15xf5TfoaSa84AFRd5J2EXekK6PhaFQhRm1IpSYtwIDAQAB" . "7zizA+9r3gQf5sEZhyJN4qLZBwJPv21heDLqgSPELUVu/xqsylf15d6m1lMhTHoNT5jYeW5M0BtiBLU5/DcME4SHJEbv1Biy3ChyZUbPQRJClKrzNN7kRpmjAqQQBKAhWmnkjKVtJPh3V30NQVrAgrQuq022ahgEdlY/TthyOqA=" . . .