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The modern form of containers, as popularly known through platforms like Docker, Singularity (Apptainer), Podman or Charliecloud, to cite only a few, began to take shape over a decade ago. However, the fundamentals behind containerization and actual benefits of containers in scientific computing remain largely unclear to a vast majority of users. In fact, there is a significant gap between simplistic “Hello world” examples found online and real scientific applications. Also, rumors suggest that achieving satisfactory performances on supercomputers across multiple nodes is impossible.
The aim of this paper is to explain how containers can leverage the potential of high-speed networks for inter-node communications with UCX on Fram and Betzy (from the Norwegian national e-infrastructure provider). It is also shown how to achieve near-native performance on LUMI (EuroHPC’s flagship) despite a “Slingshot-11” interconnect and proprietary library.
Results obtained in the standard OSU Micro-Benchmarks tests for latency and bandwidth, and with a fully-fledged climate model, demonstrate that containerized applications work just as well as their bare-metal counterparts, are portable and provide bit-for-bit reproducibility on different platforms.
Containers are therefore highly recommended to minimize deployment and porting issues i) for AaaS (Applications as a Service) coming with all the necessary software environment (rather than source code only); and ii) so that HPC users do not have to rely on anybody to install what they need and can be operational within minutes whilst still getting top performance.
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Example of monthly mean reference height (i.e., at 2 m) air temperature (TREFHT) expressed in kelvin obtained with CESM2.3 and corresponding to a typical situation in January 2000, starting from a global 1 grid which is progressively increased by a factor of 4 over the Arctic, and exhibits a further 2 resolution refinement over Greenland and Iceland.
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Figure-5 From: Unlocking the Potential of Containers in Scientific Computing to Achieve Bitwise Reproducibility, Portability and Performance
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Iaquinta, J., Fouilloux, A. (2025). Unlocking the Potential of Containers in Scientific Computing to Achieve Bitwise Reproducibility, Portability and Performance. In: Azab, A., Malkiewicz, T. (eds) Nordic e-Infrastructure Tomorrow. NeIC 2024. Communications in Computer and Information Science, vol 2398. Springer, Cham. https://doi.org/10.1007/978-3-031-86240-3_4
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Fouilloux, Anne, and Jean Iaquinta. "Unlocking the Potential of Containers in Scientific Computing to Achieve Bitwise Reproducibility, Portability and Performance." ROHub. Apr 21 ,2025. https://w3id.org/ro-id/231a8eab-7612-4b18-b4d1-dd7cf68628cf.
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Keywords,
Introduction,
Background,
Discussion,
Conclusion,
References. We read the generated paper to spot any mistakes and we highlighted inconsistancies in yellow.
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Version 2.0 generated by ChatGPT (April 2025, sikt.no). Could you write a scientific paper of 4 pages with the following sections “Abstract, Keywords,
Introduction, Background, Discussion, Conclusion, References.
” with a text that needs to be
long to be published in a good journal and the paper should be based on the following AIDA
sentences that you will need to all references in the text (make sure to add all the AIDA
sentences in the text) and add in the reference section. The reference section should list all
the AIDA sentences so you need to make sure all of them are referenced in the generated
text. ensure all the AIDA sentences are included and referenced properly. This will ensure
completeness and meet the requirements for the publication.:
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26.4
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1.272264631043257
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2.5
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text
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2.97029702970297
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7.8
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geology
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66.713034523081
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1.2826798558235168
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earth sciences
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66.713034523081
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1.2826798558235168
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computer system
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2.6656511805026653
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7.0
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bandwidth
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4.303122619954303
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11.3
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experiment
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3.046458492003046
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8.0
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LUMI s slingshot interconnect
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1.1195928753180664
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2.2
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research
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5.064737242955064
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13.3
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Raxalpe
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https://www.wikidata.org/wiki/Q149533
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computing system
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3.56234096692112
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5.6
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engineering
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25.156959414809403
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0.3401784896850586
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Economy, business and finance/Business information/Strategy and marketing/Patent, copyright and trademark
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7.3
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Hpc remain
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1.424936386768448
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2.8
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14.961832061068701
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29.4
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general
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18.055164584304656
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0.24414630234241486
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Economy, business and finance/Economic sector/Computing and information technology/Hardware
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container
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42.4
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computer programming and software
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56.787876000885944
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0.7678993940353394
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potential
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3.046458492003046
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8.0
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computing
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6.997455470737914
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11.0
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Newspaper
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Arts, culture and entertainment/Mass media/Newspaper
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potential of container
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9.26208651399491
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18.2
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communications in computer science
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5.139949109414759
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10.1
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Periodical
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Arts, culture and entertainment/Mass media/Periodical
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3.053435114503817
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6.0
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image
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3.435114503816794
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5.4
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sentence
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2.8560548362528557
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7.5
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Aida sentence
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4.427480916030534
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8.7
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potential
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4.8346055979643765
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7.6
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communication protocol
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5.217060167555217
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13.7
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portability
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3.846153846153846
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10.1
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Hardware
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Economy, business and finance/Economic sector/Computing and information technology/Hardware
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scientific computing
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2.391857506361323
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4.7
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reproducibility
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6.1704834605597965
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9.7
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software
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27.192118226600986
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27.6
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OSU micro benchmark experiment
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8.804071246819339
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17.3
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Hpc application
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1.4758269720101782
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2.9
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research object
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16.641221374045802
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32.7
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mathematical and computer sciences
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56.787876000885944
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0.7678993940353394
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A. Malkiewicz
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5.852417302798982
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9.2
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portability
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6.106870229007634
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9.6
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GigaByte/second) on Fram and Betzy, matching host installed OpenMPI . . . On LUMI, containers with MPICH . . and OFI swapped Slingshot libraries achieve identical bandwidth to CrayMPICH . a .
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3.698332124728063
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5.1
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Unlocking the Potential of Containers in Scientific Computing to Achieve Bitwise Reproducibility, Portability and Performance.
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30.96446700507614
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42.7
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script
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2.6656511805026653
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7.0
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LUMI
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https://w3id.org/ro/terms/earth-science#normScore
6.297709923664122
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9.9
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http://schema.org/name
Iaquinta, J., Fouilloux, A. (2025). Unlocking the Potential of Containers in Scientific Computing to Achieve Bitwise Reproducibility, Portability and Performance.
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23.132704858593183
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31.9
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Containers provide excellent performance, portability, and bit for bit reproducibility for HPC applications like CESM, simplifying workflows and reducing deployment time. https://w id.org/np/RAisCNBIy b KxWJo uPmvkf PSRAdt NBq Aug KAKU
.
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7.614213197969542
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10.5
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http
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3.816793893129771
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6.0
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image
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2.8560548362528557
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7.5
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node
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3.1170483460559804
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4.9
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communication protocol
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5.089058524173028
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8.0
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Information science
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Science and technology/Social sciences/Information science
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Hpc architecture
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1.2213740458015268
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2.4
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fluid mechanics and thermodynamics
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25.156959414809403
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https://w3id.org/ro/terms/earth-science#score
0.3401784896850586
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other earth sciences
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33.28696547691899
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0.6400026679039001
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linguistics
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15.960591133004925
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16.2
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2025
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experiment
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3.880407124681934
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6.1
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Capital punishment
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Crime, law and justice/Law enforcement/Punishment (criminal)/Capital punishment
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general (general)
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https://w3id.org/ro/terms/earth-science#NASA
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https://w3id.org/ro/terms/earth-science#normScore
18.055164584304656
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0.24414630234241486
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aida sentence
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9.669211195928753
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19.0
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http://schema.org/name
derivative
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https://w3id.org/ro/terms/earth-science#normScore
3.56234096692112
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5.6
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informatics
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https://w3id.org/ro/terms/earth-science#Concept
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https://w3id.org/ro/terms/earth-science#normScore
2.2086824067022084
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5.8
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http://schema.org/name
Hpc system
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https://w3id.org/ro/terms/earth-science#normScore
1.8829516539440203
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3.7
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guest
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https://w3id.org/ro/terms/earth-science#Concept
https://w3id.org/ro-id/enrichment/b6dd3532-a74c-464b-9bbc-148bdb69f05f
https://w3id.org/ro/terms/earth-science#normScore
3.008377760853008
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https://w3id.org/ro/terms/earth-science#score
7.9
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http://schema.org/name
publishing
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https://w3id.org/ro/terms/earth-science#normScore
2.6600985221674875
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2.7
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http://schema.org/name
deployment time. http
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https://w3id.org/ro-id/enrichment/b85dfe8d-ded4-47e2-9b61-91bc1b4f6199
https://w3id.org/ro/terms/earth-science#normScore
1.7302798982188294
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3.4
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http://schema.org/name
Containers can achieve near native performance and reproducibility in HPC using open source tools, overcoming proprietary library limitations on supercomputers like LUMI. https://w id.org/np/RA SFYwZmDw e rLiResVh VKiRsnIrzcoMl atf Lk
.
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https://w3id.org/ro/terms/earth-science#normScore
2.3930384336475705
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3.3
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LUMI supercomputer
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https://w3id.org/ro-id/enrichment/c0920d90-1ee3-410f-9e24-036a4e23c6a0
https://w3id.org/ro/terms/earth-science#normScore
3.4096692111959284
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https://w3id.org/ro/terms/earth-science#score
6.699999999999999
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operation
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https://w3id.org/ro/terms/earth-science#normScore
2.7418126428027416
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7.2
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aggregated script
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https://w3id.org/ro/terms/earth-science#Phrase
https://w3id.org/ro-id/enrichment/c306c1fe-3a21-46ed-bb46-abe0a0121aaa
https://w3id.org/ro/terms/earth-science#normScore
4.529262086513995
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https://w3id.org/ro/terms/earth-science#score
8.9
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http://schema.org/name
High performance computing
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https://w3id.org/ro/terms/earth-science#Lemma
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https://w3id.org/ro/terms/earth-science#normScore
4.198473282442748
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6.6
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http://schema.org/name
container
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https://w3id.org/ro/terms/earth-science#Lemma
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https://w3id.org/ro/terms/earth-science#normScore
7.251908396946564
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https://w3id.org/ro/terms/earth-science#score
11.399999999999999
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Unlocking the Potential of Containers in Scientific Computing to Achieve
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2.610587382160986
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3.6
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http://schema.org/name
information technology
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https://w3id.org/ro/terms/earth-science#normScore
4.729064039408867
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4.8
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http://schema.org/name
earth sciences
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33.28696547691899
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0.6400026679039001
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performance
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https://w3id.org/ro/terms/earth-science#normScore
4.071246819338422
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6.4
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singularity image
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3.0025445292620865
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5.9
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sentence
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https://w3id.org/ro/terms/earth-science#Lemma
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https://w3id.org/ro/terms/earth-science#normScore
3.944020356234097
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6.2
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http://schema.org/name
computing
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https://w3id.org/ro/terms/earth-science#Concept
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https://w3id.org/ro/terms/earth-science#normScore
5.217060167555217
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https://w3id.org/ro/terms/earth-science#score
13.7
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Patent, copyright and trademark
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https://w3id.org/ro/terms/earth-science#IPTC
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https://w3id.org/ro/terms/earth-science#path
Economy, business and finance/Business information/Strategy and marketing/Patent, copyright and trademark
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http://schema.org/name
reproducibility
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10.3
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5.0
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9.4
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6.2
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