https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/Head https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs http://www.nanopub.org/nschema#hasAssertion https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/assertion https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs http://www.nanopub.org/nschema#hasProvenance https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/provenance https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs http://www.nanopub.org/nschema#hasPublicationInfo https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/pubinfo https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.nanopub.org/nschema#Nanopublication https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/assertion http://purl.obolibrary.org/obo/BTO_0000487 http://www.w3.org/2000/01/rdf-schema#label fruit body http://purl.obolibrary.org/obo/BTO_0001171 http://www.w3.org/2000/01/rdf-schema#label spore http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/2000/01/rdf-schema#label is an instance of http://www.w3.org/2000/01/rdf-schema#comment http://www.w3.org/2000/01/rdf-schema#label has the free-text comment http://www.w3.org/2002/07/owl#sameAs http://www.w3.org/2000/01/rdf-schema#label is the same as http://www.w3.org/2003/01/geo/wgs84_pos#location http://www.w3.org/2000/01/rdf-schema#label has the location https://w3id.org/biolink/vocab/object http://www.w3.org/2000/01/rdf-schema#label links the organism to the nucleotide sequence https://w3id.org/biolink/vocab/predicate http://www.w3.org/2000/01/rdf-schema#label refers to the relation https://w3id.org/biolink/vocab/subject http://www.w3.org/2000/01/rdf-schema#label refers to https://w3id.org/biolink/vocab/timepoint http://www.w3.org/2000/01/rdf-schema#label has the time stamp - points to the date and time associated with this relation or organism (e.g. date of collection); if occurrence URI is given, this is redundant and does not need to be filled in https://w3id.org/kpxl/biodiv/terms/OrganismToNucleotideSequenceAssociation http://www.w3.org/2000/01/rdf-schema#label an association of an organism to a nucleotide sequence https://w3id.org/kpxl/biodiv/terms/hasAssembledNucleotideSequence http://www.w3.org/2000/01/rdf-schema#label assembled nucleotide sequence https://w3id.org/kpxl/biodiv/terms/hasIsolationProtocol http://www.w3.org/2000/01/rdf-schema#label has the isolation protocol https://w3id.org/kpxl/biodiv/terms/hasLifeCycleStage http://www.w3.org/2000/01/rdf-schema#label has the life cycle stage https://w3id.org/kpxl/biodiv/terms/hasLocationCoordinates http://www.w3.org/2000/01/rdf-schema#label has the location coordinates - points to the location coordinates associated with this relation or organism (e.g. place of collection); if occurrence URI is given, this is redundant and does not need to be filled in https://w3id.org/kpxl/biodiv/terms/hasObservedNucleotideSequence http://www.w3.org/2000/01/rdf-schema#label observed nucleotide sequence https://w3id.org/kpxl/biodiv/terms/hasOccurrence http://www.w3.org/2000/01/rdf-schema#label has the occurrence - links an organism to a record of a specific occurrence of it https://w3id.org/kpxl/biodiv/terms/hasSampleType http://www.w3.org/2000/01/rdf-schema#label has the sample type https://w3id.org/kpxl/biodiv/terms/hasSequencedNucleotideSequence http://www.w3.org/2000/01/rdf-schema#label sequenced nucleotide sequence https://w3id.org/kpxl/biodiv/terms/hasStrainID http://www.w3.org/2000/01/rdf-schema#label has the strain ID https://w3id.org/kpxl/biodiv/terms/hasTaxonConceptDefinition http://www.w3.org/2000/01/rdf-schema#label is used as defined in https://w3id.org/kpxl/biodiv/terms/hasTaxonName http://www.w3.org/2000/01/rdf-schema#label has the name - links a taxon usage to a taxon name https://w3id.org/kpxl/biodiv/terms/isIdentifiedByNuceotideSequence http://www.w3.org/2000/01/rdf-schema#label identified by nucleotide sequence https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/assertion http://purl.org/dc/terms/description <p>Such a nanopublication expresses an association between an organism (normally identified as belonging to a certain taxon concept) and a nucleotide sequence (that can correspond to a gene or subunit of a gene), for example expressing that Sequence ID (INSDC / Genbank accession number or BOLD Process ID) identifies Organism X as belonging to a Taxon Concept Y.</p> https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/assertion http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/np/o/ntemplate/AssertionTemplate https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/assertion http://www.w3.org/2000/01/rdf-schema#label Expressing an association between an organism and a nucleotide sequence (extended) https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/assertion https://w3id.org/np/o/ntemplate/hasDefaultProvenance http://purl.org/np/RAYfEAP8KAu9qhBkCtyq_hshOvTAJOcdfIvGhiGwUqB-M https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/assertion https://w3id.org/np/o/ntemplate/hasNanopubLabelPattern Organism of ${taxonname} - ${relation} - ${nucleotidesequence} https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/assertion https://w3id.org/np/o/ntemplate/hasStatement https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/st00 https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/assertion https://w3id.org/np/o/ntemplate/hasStatement https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/st05 https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/assertion https://w3id.org/np/o/ntemplate/hasStatement https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/st09 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https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/assertion https://w3id.org/np/o/ntemplate/hasStatement https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/st85 https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/assertion https://w3id.org/np/o/ntemplate/hasStatement https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/st86 https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/assertion https://w3id.org/np/o/ntemplate/hasStatement https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/st87 https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/assertion https://w3id.org/np/o/ntemplate/hasStatement https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/st90 https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/assertion https://w3id.org/np/o/ntemplate/hasTag Biodiversity https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/assertion https://w3id.org/np/o/ntemplate/hasTargetNanopubType https://w3id.org/kpxl/biodiv/terms/BiodivNanopub https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/association http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/np/o/ntemplate/IntroducedResource https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/association http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/np/o/ntemplate/LocalResource https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/association http://www.w3.org/2000/01/rdf-schema#label this association https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/comment http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/np/o/ntemplate/LongLiteralPlaceholder https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/comment http://www.w3.org/2000/01/rdf-schema#label short explanation related to the above statement https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/coordinates http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/np/o/ntemplate/LiteralPlaceholder https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/coordinates http://www.w3.org/2000/01/rdf-schema#label lat/long in format like '+47.37+8.54' or with altitude '+47.37+8.54+410.5' https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/coordinates https://w3id.org/np/o/ntemplate/hasRegex [+-][0-9]+(\.[0-9]+)?[+-][0-9]+(\.[0-9]+)?([+-][0-9]+(\.[0-9]+)?)? https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/isolationProtocol http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/isolationProtocol http://www.w3.org/2000/01/rdf-schema#label DOI of isolation protocol document https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/isolationProtocol https://w3id.org/np/o/ntemplate/hasRegex https://doi\.org/.+ https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/lifecyclestage http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/np/o/ntemplate/RestrictedChoicePlaceholder https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/lifecyclestage http://www.w3.org/2000/01/rdf-schema#label select the life cycle stage of the organism; leave blank if unknown https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/lifecyclestage https://w3id.org/np/o/ntemplate/possibleValue http://purl.obolibrary.org/obo/BTO_0000487 https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/lifecyclestage https://w3id.org/np/o/ntemplate/possibleValue http://purl.obolibrary.org/obo/BTO_0001171 https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/lifecyclestage https://w3id.org/np/o/ntemplate/possibleValuesFrom http://purl.org/np/RAVZS2MV-siFEqsgFTtgSoKA5qJkp7r1nM_n-MqPkvgdE https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/location http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/location http://www.w3.org/2000/01/rdf-schema#label GeoNames location ID (https://sws.geonames.org/.../) https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/location https://w3id.org/np/o/ntemplate/hasRegex https://sws\.geonames\.org/[0-9]+/ https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/nucleotidesequence http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/nucleotidesequence http://www.w3.org/2000/01/rdf-schema#label INSDC/Genbank accession # (e.g. https://www.ncbi.nlm.nih.gov/nuccore/...) https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/occurrence http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/occurrence http://www.w3.org/2000/01/rdf-schema#label occurrence URI from GBIF (https://www.gbif.org/occurrence/...) or iDigBio, BOLD, PlutoF, etc. https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/organism http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/np/o/ntemplate/LocalResource https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/organism http://www.w3.org/2000/01/rdf-schema#label the organism https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/organismAlt http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/np/o/ntemplate/ExternalUriPlaceholder https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/organismAlt http://www.w3.org/2000/01/rdf-schema#label any existing URI identifier of organism (e.g. of digital collection specimen or observation in nature) https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/relation http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/np/o/ntemplate/RestrictedChoicePlaceholder https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/relation http://www.w3.org/2000/01/rdf-schema#label the relation between the organism and the nucleotide sequence https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/relation https://w3id.org/np/o/ntemplate/hasDefaultValue https://w3id.org/kpxl/biodiv/terms/hasObservedNucleotideSequence https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/relation https://w3id.org/np/o/ntemplate/possibleValue https://w3id.org/kpxl/biodiv/terms/hasAssembledNucleotideSequence https://w3id.org/np/RARhEnvsUzWmW9AzNfZoPFU05rMpsy1Tj02grJWohM8Bs/relation https://w3id.org/np/o/ntemplate/possibleValue https://w3id.org/kpxl/biodiv/terms/hasObservedNucleotideSequence 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