Nanopublication

ID

http://purl.org/np/RAVJhdaFi9jN_l4fYtseN0muLo_4nwFBylO6M8DrdckmU
Formats

Content

@prefix pplan: <http://purl.org/net/p-plan#> .
@prefix dce: <http://purl.org/dc/elements/1.1/> .
@prefix this: <http://purl.org/np/RAVJhdaFi9jN_l4fYtseN0muLo_4nwFBylO6M8DrdckmU> .
@prefix sub: <http://purl.org/np/RAVJhdaFi9jN_l4fYtseN0muLo_4nwFBylO6M8DrdckmU#> .
@prefix bs: <https://bioschemas.org/profiles/LabProtocol/0.4-DRAFT-2020_07_23/#> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix pav: <http://purl.org/pav/> .
@prefix authority: <https://hypothes.is/a/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix sp: <http://purl.org/net/SMARTprotocol#> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubInfo .
}

sub:assertion {
  <http://purl.obolibrary.org/obo/CHEBI_17992> rdfs:label "100mM sucrose" .
  
  <http://purl.obolibrary.org/obo/CHEBI_29234> rdfs:label "1% Triton -X" .
  
  <http://purl.obolibrary.org/obo/CHEBI_8984> rdfs:label "1% SDS" .
  
  sub:_1 rdfs:label "mosquitoes" .
  
  sub:_2 rdfs:label "mosquitoes" .
  
  sub:_3 rdfs:label "micropistle" .
  
  sub:_4 rdfs:label "1X STE buffer" .
  
  sub:_5 rdfs:label "20 µl/ ml  Proteinase K" .
  
  sub:_6 rdfs:label "10 µl/ ml  Rnase A" .
  
  sub:step a pplan:Step;
    dce:description "Grind mosquitoes  in  1.5 ml eppendorf  tube with micropistle in 50-100 µl 1X STE buffer ( 50mM Nacl,50mM Tris- HCL,100mM EDTA, Ph 8.0) along with 100mM sucrose. Add 1X STE buffer to a total volume of 300-500 µl for a single mosquito and 1 ml for mosquito pool like 4,6,8,10 numbers. Then add 1% SDS ,1% Triton -X , 10 µl/ ml  Rnase A (20mg/ml), 20 µl/ ml  Proteinase K (20mg/ml) and mix it.";
    sp:hasExperimentalInput sub:_1;
    bs:bioSampleUsed sub:_2;
    bs:labEquipmentUsed sub:_3, <http://www.bioassayontology.org/bao#BAO_0010014>;
    bs:reagentUsed <http://purl.obolibrary.org/obo/CHEBI_17992>, <http://purl.obolibrary.org/obo/CHEBI_29234>,
      <http://purl.obolibrary.org/obo/CHEBI_8984>, sub:_4, sub:_5, sub:_6 .
  
  <http://www.bioassayontology.org/bao#BAO_0010014> rdfs:label "1.5 ml eppendorf  tube" .
}

sub:provenance {
  sub:assertion pav:createdWith <https://nanotate.bitsfetch.com>;
    prov:generatedAtTime "2021-03-11T10:47:39.109662"^^xsd:dateTime;
    prov:wasAttributedTo <https://hypothes.is/users/iannotate> .
}

sub:pubInfo {
  sub:assertion prov:wasDerivedFrom authority:8Y0HtIJ9EeuxMKftfvVUrw, authority:AHbk6IJ-EeuLn7c9eitXuQ,
      authority:FBJa-oJ-EeuVON8E0bPEnQ, authority:JzPoLoJ-EeubeTMBRz-oHg, authority:P9yYHIJ-Eeuk1J8X-v5LOg,
      authority:VhkMtIJ-EeuaQsuiGJkaPw, authority:dCvMjIJ-EeuYqLMMrOutfQ, authority:i-hYaIJ-EeuaRdNsg6w5Hg,
      authority:refO2oJ-Eeue2LvAHnLUJw, authority:vES-joJ-EeuhAUfFhe7OGQ .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCEOtYac15zsWN/LAu3q7YFdW0UZNfX3BAarHW/LB1DHGcz0yYr0v7hKGbnCLJ+UkDfu3Mgj7BnCm1s8ulMULKfF4YjqS2YKHYZjNKVaIjSigFOpjOwIx99+qPlvd5CuG+Gia/sJA05jy2bPKLwb/kmVeeX0zORZudWLyRMLXp8UQIDAQAB";
    npx:hasSignature "duWaDuHGjHoc6Uf6ghdCrerkzHSqRcrxIW3aCCbuXeo4iE8P9tZm4qeVhS/8Q/0QOyoj//CCxO4mmH298PevKsJXxg4iKKLItwdSQWsvaT910XnepJwk0lJdFLhowSwUBV708RbxsNRWurPlWT0my7SYxvQYwnzb6zXQA6XWUBg=";
    npx:hasSignatureTarget this: .
  
  this: npx:introduces sub:step;
    prov:generatedAtTime "2021-03-11T10:47:39.109662"^^xsd:dateTime;
    prov:wasAttributedTo <https://hypothes.is/users/iannotate> .
}