@prefix this: . @prefix sub: . @prefix np: . @prefix dct: . @prefix pav: . @prefix rdf: . @prefix owl: . @prefix rdfg: . @prefix dce: . @prefix xsd: . @prefix rdfs: . @prefix prov: . @prefix npx: . sub:Head { this: a np:Nanopublication; np:hasAssertion sub:assertion; np:hasProvenance sub:provenance; np:hasPublicationInfo sub:pubinfo . } sub:assertion { a . a ; "involve in HD gene deregulation" . a ; "HD" . a ; "participate in epigenetic processes" . a ; "genetics" . a ; "genes" . a ; "have an epigenetic role" . a , ; "Purpose of workflow: This workflow takes two concept ids as input and returns the top ranking \"B\" concepts according to Swanson's ABC model of discovery, where the relationships AB and BC are known and reported in the literature, and the implicit relationship AC is a putative new discovery. It might also be the case that AC is already known. In that case AC does not represent a new discovery but will still be returned (see workflow example values). The B concepts are returned sorted on the percentage of the contributions of the individual concepts to the coherence score (the average of the inner product scores of all possible concept pairs within the group)."; "Explain Scores" . a ; "http"; "2.0706042090970804"; "6.1" . a ; "deregulation"; "9.911744738628649"; "29.2" . a ; "deregulation"; "3.598099117447386"; "10.6" . a ; "chromatin"; "4.59469555472544"; "12.3" . a ; "testing"; "2.545824847250509"; "7.5" . a ; "HD"; "8.146639511201629"; "24.0" . a ; "life sciences"; "35.76177208527657"; "0.9203993678092957" . a ; "outcome"; "1.2219959266802443"; "3.6" . a ; "Genoa"; "20.570264765784113"; "60.6" . a ; "gene"; "14.60590212924916"; "39.1" . a ; "Language"; "Arts, culture and entertainment/Culture/Language" . a ; "earth sciences"; "47.691405491207696"; "0.9814894795417786" . a ; "have an epigenetic role"; "0.06863417982155112"; "0.2" . a ; "Economic policy"; "Economy, business and finance/Economy/Economic policy" . a ; "life sciences"; "35.87466373187602"; "0.9233048558235168" . a ; "life sciences (general)"; "35.87466373187602"; "0.9233048558235168" . a ; "HD"; "3.9596563317146063"; "10.6" . a ; "missing link"; "4.514596062457569"; "13.3" . a ; "geology"; "47.691405491207696"; "0.9814894795417786" . a ; "Animal"; "Human interest/Animal" . a ; "chromatin analysis"; "0.857927247769389"; "2.5" . a ; "analysis of Ro"; "3.843514070006863"; "11.2" . a ; "Interpretation of the results from the analysis of RO: http://sandbox.rohub.org/rodl/ROs/HD_chromatin_analysis/. This RO is an extension of the HD chromatin analysis to interpret the results and reveal missing links that can according to literature explain HD gene deregulation"; "33.333333333333336"; "100.0" . a ; "genes involved in HD gene deregulation have an epigenetic role"; "33.333333333333336"; "100.0" . a ; "HD"; "4.632050803137841"; "12.4" . a ; "gene"; "2.919212491513917"; "8.6" . a ; "deregulation"; "4.333208815838626"; "11.6" . a ; "epigenetic"; "1.357773251866938"; "4.0" . a ; "geochemistry"; "27.692441186701984"; "0.5699106454849243" . a ; "system"; "3.6320434487440596"; "10.7" . a ; "analysis"; "3.0257751214045574"; "8.1" . a ; "hard drive"; "4.107264086897488"; "12.1" . a ; "Ro"; "4.989816700610998"; "14.7" . a ; "earth sciences"; "24.616153322090323"; "0.5066006183624268" . a ; "results from the analysis"; "1.3040494166094714"; "3.8" . a ; "HD"; "8.06873365707882"; "21.6" . a ; "epigenetic"; "1.5274949083503053"; "4.5" . a ; "Genoa"; "25.476279417258127"; "68.2" . a ; "analyzation"; "1.4596062457569585"; "4.3" . a ; "deregulate in HD"; "16.197666437886067"; "47.2" . a ; "geology"; "24.616153322090323"; "0.5066006183624268" . a ; "epigenetic process"; "17.84488675360329"; "52.0" . a ; "service-account-enrichment" . a , , ; pav:importedBy ; "http://sandbox.rohub.org/rodl/ROs/data_interpretation/"; "2014-02-11T16:00:29.893+01:00"; "https://www.google.com/accounts/o8/id?id=AItOawnOAeiyuU0cZ91YBD1EW7d43AlWw8xdALU"; ; "81612"^^xsd:integer; "https://api.rohub.org/api/ros/cc288df3-b3fd-4622-b22d-0a5995a60182/crate/download/"; ; "2013-08-30 16:15:52.229000+00:00"; "2025-03-05 00:55:18.558902+00:00"; "2013-08-30 16:15:52.229000+00:00"; "This RO is an extension of the HD chromatin analysis to interpret the results and reveal missing links that can according to literature explain HD gene deregulation"; "application/ld+json"; , , , ; "https://w3id.org/ro-id/cc288df3-b3fd-4622-b22d-0a5995a60182"; ; "Interpretation of the results from the analysis of RO: http://sandbox.rohub.org/rodl/ROs/HD_chromatin_analysis/"; 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"https://w3id.org/ro-id/2c7189d2-d266-4630-8d16-ad1bf9ec7fce", "https://w3id.org/ro-id/4a765c87-c7cb-4215-891b-48c382f8a4d1", "https://w3id.org/ro-id/8221f2e8-36f3-475a-a3c4-f3436557b826", "https://w3id.org/ro-id/a4124be5-d046-4f2b-800d-d7590c92fd0f", "https://w3id.org/ro-id/c95c1880-2001-4adc-ae9a-3e1cebc25cb7", "https://w3id.org/ro-id/d268bf9c-63de-4175-91ea-971ff050f080"; "https://w3id.org/ro-id/2a7c2ba3-228c-4590-99f4-58a66e4ebcc2", "https://w3id.org/ro-id/2ec11ead-92f0-4159-88cc-78873ac0bacf", "https://w3id.org/ro-id/56830561-7cf5-478e-bc62-26d062c2b0ae", "https://w3id.org/ro-id/f574ba8d-4b7e-46d0-bd93-56b9148b1a16"; "https://w3id.org/ro-id/131167ec-479c-49d5-9135-cc955392d0f9", "https://w3id.org/ro-id/2730015d-00d4-45f5-8c10-97554e552133", "https://w3id.org/ro-id/44167e71-3706-445b-9bf2-e1d1c7c986d4", "https://w3id.org/ro-id/64096a1a-629c-4feb-8cc5-ce8fadc0234d", "https://w3id.org/ro-id/6dd797b1-36ed-4f02-bbec-a400d7d5bc1c", "https://w3id.org/ro-id/8c43853a-f108-408e-ab6b-8a9eeaa0d683", "https://w3id.org/ro-id/abfb76e8-03cd-47d1-a1ce-4af13899fbaf", "https://w3id.org/ro-id/bda61ce1-ca02-4a61-bfe7-d0d8a1262725", "https://w3id.org/ro-id/cefc1899-58ff-411f-9a61-56d5c5a7f1b3", "https://w3id.org/ro-id/d25c258a-25e2-4223-88e2-a39d03777abb", "https://w3id.org/ro-id/e583f104-8b5f-46e7-8110-b5364bfae71d", "https://w3id.org/ro-id/f11afa1c-2dd6-42dd-9534-7a3f921c22b2", "https://w3id.org/ro-id/f84a49f0-89c4-469b-88b4-36c656990d7e"; "https://w3id.org/ro-id/19c8fb61-b736-4f1f-b663-4466b8a21a87", "https://w3id.org/ro-id/306c040b-5d50-44b9-a014-6dc759c385ff", "https://w3id.org/ro-id/335de5f5-96b9-4127-b047-4c54e3985451", "https://w3id.org/ro-id/e6c8e6d3-6a2d-40bb-af32-87a510711148", "https://w3id.org/ro-id/f658aa97-3fff-4b39-94e0-f437739d8ed0", "https://w3id.org/ro-id/fbed7dce-002e-44ef-957e-f2f96f977b30"; "https://w3id.org/ro-id/2caf247d-82c0-4fda-af1a-f1944bdf3319", "https://w3id.org/ro-id/59b12304-f024-4c4d-b618-21f3e0aacaea", "https://w3id.org/ro-id/5cbf3769-2089-43f3-a220-7f776d7645b5", "https://w3id.org/ro-id/a5f9b44e-6110-4ce1-b246-cf300c77c3ae", "https://w3id.org/ro-id/c4101086-0ec4-4b4d-ae9e-b3cf4547cec1", "https://w3id.org/ro-id/cbb1798b-e157-418b-a792-07994ee646ca", "https://w3id.org/ro-id/d2ecc7fd-2210-45b4-a132-17d8a1d7e870", "https://w3id.org/ro-id/ebcda1a0-b236-4583-bf35-2f359ec88a03", "https://w3id.org/ro-id/f15b7824-98e0-4b4c-b7ed-32f4620c79df", "https://w3id.org/ro-id/f2f7540f-60e0-4c26-a560-89ac96a6801b", "https://w3id.org/ro-id/f58baf46-a044-417f-a391-fb22ecb98da4", "https://w3id.org/ro-id/f7b8decf-8eb6-4927-8c91-06169006b900"; "https://w3id.org/ro-id/5d9b6a08-802a-49f1-af0c-2989519f7a4a", "https://w3id.org/ro-id/60623926-099c-4a86-9a6a-39020f27e8d7", "https://w3id.org/ro-id/f5286a0e-2091-4156-857f-2f5068b60929"; "Eleni Mina. \"Interpretation of the results from the analysis of RO: http://sandbox.rohub.org/rodl/ROs/HD_chromatin_analysis/.\" ROHub. Aug 30 ,2013. https://w3id.org/ro-id/cc288df3-b3fd-4622-b22d-0a5995a60182." . a , ; , , , ; "data_interpretation" . a , , ; ; "41692"^^xsd:integer; "https://api.rohub.org/api/resources/22f6a795-b434-4dab-9fd1-db2f70510a4f/download/"; ; "2013-08-31 15:02:18.108000+00:00"; "2022-03-25 09:25:32.687725+00:00"; "This workflow suggests concept ids that match the query term. The user can run this workflow with any term of interest as for example \"human\", \"htt\", \"Transcription\" etc, and will get suggestions for concept ids together with descriptions. Then can choose the concept id that matches the best to her/his needs and use it to the rest of the CPA workflows"; ; "Get concept suggestions from term"; "2013-08-31 15:02:18.108000+00:00" . a , , ; ; "188023"^^xsd:integer; "https://api.rohub.org/api/resources/2d792031-89e3-48c9-8a8b-5d860fb1eddc/download/"; ; "2013-11-05 13:07:43.493000+00:00"; "2022-03-25 09:25:31.366149+00:00"; "This workflow can prioritize genes that are related to a specific concept, e.g. HTT. In order to obtain the concept id of the term that is going to be matched against the gene list, the workflow Get concept suggestions from term, needs to run first. matchConceptProfileList: the gene list we want to match (order) against a particular concept queryConceptProfileList: the concept (or gene list) we want to match the query against"; ; "Prioritize gene list related to a concept /list of concepts"; "2013-11-05 13:07:43.493000+00:00" . a , , ; ; "67"^^xsd:integer; "https://api.rohub.org/api/resources/4e9c8958-d814-4ddb-bc22-1ec5455e2283/download/"; ; "2013-08-31 15:11:30.970000+00:00"; "2022-03-25 09:25:19.712506+00:00"; "text/plain"; ; "conclusions.txt"; "2013-08-31 15:11:30.970000+00:00" . a , , ; ; "39476"^^xsd:integer; "https://api.rohub.org/api/resources/b525b766-e586-4ffa-85f9-1c035a9d4910/download/"; ; "2013-08-31 15:37:06.058000+00:00"; "2022-03-25 09:25:24.978095+00:00"; "Sketch of the workflows and their explanation, for data interpretation, plus the connection to the output from the RO for chromatin analysis"; "image/png"; ; "workflow sketch data interpretation"; "2013-08-31 15:37:06.058000+00:00" . a , , ; ; "30787"^^xsd:integer; "https://api.rohub.org/api/resources/c3eabd9c-7b2b-44a9-a3bc-2a088ff7769a/download/"; ; "2013-11-05 13:09:01.493000+00:00"; "2022-03-25 09:25:29.623682+00:00"; "This workflow lists all IDs and descriptions of the predefined concept set"; ; "ListPredefinedConceptSets"; "2013-11-05 13:09:01.493000+00:00" . a , , ; ; "63"^^xsd:integer; "https://api.rohub.org/api/resources/c81c3e0f-1ec6-49f2-9420-8b65fa31ba7c/download/"; ; "2013-08-31 15:04:48.724000+00:00"; "2022-03-25 09:25:17.742156+00:00"; "text/plain"; ; "hypothesis.txt"; "2013-08-31 15:04:48.724000+00:00" . a , , ; ; "203555"^^xsd:integer; "https://api.rohub.org/api/resources/ff9e943b-ebf1-4ef2-be95-77a3aaf55b51/download/"; ; "2013-11-05 13:07:17.887000+00:00"; "2022-03-25 09:25:30.549318+00:00"; "This workflow annotates a comma separated gene list with a predefined concept set as for example Biological processes or Disease/syndrome. To obtain the particular id for each concept set (e.g. \"5\" for Biological processes), the workflow listPredefinedConceptSets needs to run first. The workflow is using the anni web services"; ; "Annotate a gene list with Biological processes"; "2013-11-05 13:07:17.887000+00:00" . a ; dct:conformsTo ; . a ; "role"; "5.491221516623086"; "14.7" . a ; "deregulation"; "11.31864026895779"; "30.3" . a ; "earth sciences"; "27.692441186701984"; "0.5699106454849243" . a ; "epigenetic role"; "6.554564172958133"; "19.1" . a ; "missing link"; "5.304445274561076"; "14.2" . a ; "life sciences (general)"; "28.363564182847412"; "0.7299919724464417" . a ; "HD"; "3.8696537678207736"; "11.4" . a ; "HD chromatin analysis"; "14.13864104323953"; "41.2" . a ; "linguistics"; "100.0"; "7.7" . a ; "gene"; "13.06856754921928"; "38.5" . a ; "Ro"; "5.790063503922301"; "15.5" . a ; "HD gene deregulation"; "25.806451612903224"; "75.2" . a ; "gene deregulation"; "1.8188057652711047"; "5.3" . a ; "Genes deregulated in HD, are participating in epigenetic processes"; "33.333333333333336"; "100.0" . a ; "Economic policy"; "Economy, business and finance/Economy/Economic policy" . a ; "HD gene deregulation"; "11.358956760466711"; "33.1" . a ; "life sciences"; "28.363564182847412"; "0.7299919724464417" . a ; "participate in epigenetic process"; "0.20590253946465337"; "0.6" . a ; "gene"; "3.399327605528577"; "9.1" . a ; "chromatin"; "4.039375424304141"; "11.9" . a ; "life sciences (general)"; "35.76177208527657"; "0.9203993678092957" . a ; "role"; "5.363204344874406"; "15.8" . a ; "Eleni Mina" . a ; "service-account-generation-service" . } sub:provenance { sub:assertion prov:wasDerivedFrom . } sub:pubinfo { this: a npx:RoCrateNanopub; dct:created "2025-11-11T17:05:12.362+01:00"^^xsd:dateTime; npx:introduces ; rdfs:label "Interpretation of the results from the analysis of RO: http://sandbox.rohub.org/rodl/ROs/HD_chromatin_analysis/" . sub:sig npx:hasAlgorithm "RSA"; npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEA4pPaESKwmC6l37P86K6TNLq6yeQtc7m9CvcqauLs/1FC0viHvQnFBgxj0a+loPDv/Egwe6OqFpa0iW9Ypnyz9YPoh+pxbRXonbuMOb+8Ry9hXZ+TEKfWjhjVDGEaClwfRwglh2HI/xfV4CD9AgvDOEoZQiyta8a90PYwJ3G6e70oCHTn61+OWTkI9KRYHOYgg3btdy2Z7q/30PTFawb2ZT5aIfIJYobUYv2a7yhtcqWCHZeKv0bxGnRjTFNx1rscBMlLJSzvRtpQc1cCRVEPFZHo1adaXCI9tGvn4cxeNQ96y8dxkN1XhpaJairde+23MDzf42Oe97KG2HYzKiyVnQIDAQAB"; npx:hasSignature "lP/p3BBxyaL20XIIkmkPWAtjGyXBR71QO+OXZkIdIV6Shzzqw1eO7MHQGu7CBFrGh5nI+VHeX9tM1iztzJxLWdcj+YK8YdKUT9C+i14jqN+IIODlxMOoXkUUp67rVtfwKDib1kvBW+Rxs7QQ86epvEWMQaq+tVuWp89Vgi8I+uZHs5QcMiwqu9N7HvKLbmVZ5eKRjTuFVXu67HcnK9myuImw2PNnWdQg/uOrrhCLY72W0c8SdyqczjmBNIXeiZ+dGkWZBaWamcxp49NPH7+YuURcZBxdaD8nuxRZpEsUt8ZXbe4QZOhfYyQc6iCDr5Gstf9akNZM32bdj8EDPb58Rg=="; npx:hasSignatureTarget this:; npx:signedBy . }