@prefix this: <https://w3id.org/np/RAW0JENi2rtOGy9c6oXceysd2B0a_LXVZ3PiP_8QaWM9k> .
@prefix sub: <https://w3id.org/np/RAW0JENi2rtOGy9c6oXceysd2B0a_LXVZ3PiP_8QaWM9k/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  sub:get-biochementity-info a <https://w3id.org/kpxl/grlc/grlc-query>;
    dct:description "Key-value Info table for a biochementity (a chemical entity defined as a subclass of BioChemEntity). Finds the entity's latest defining nanopub ('partid', signed by an owning-resource member pubkey 'pubkey', not invalidated) and shows every field the biochementity template allows: the name (and its Dutch nl-be variant), alternative names, type, superclasses, metabolite/isomer relations, chemical roles, external identifiers, group labels, context-specific aliases, comment, the vocabulary it is part of, and the defining nanopub. Literal values go in one column; IRI values go in a linked column with a companion label column (linked entities defined on the network are shown by their label). Multi-valued properties are collected into one cell; rows for optional fields are omitted when absent.";
    dct:license <http://www.apache.org/licenses/LICENSE-2.0>;
    rdfs:label "Get biochementity info";
    <https://w3id.org/kpxl/grlc/endpoint> <https://w3id.org/np/l/nanopub-query-1.1/repo/full>;
    <https://w3id.org/kpxl/grlc/sparql> """prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>
prefix dct: <http://purl.org/dc/terms/>
prefix schema: <http://schema.org/>
prefix skos: <http://www.w3.org/2004/02/skos/core#>
prefix owl: <http://www.w3.org/2002/07/owl#>
prefix obo: <http://purl.obolibrary.org/obo/>
prefix pehterms: <https://w3id.org/peh/terms/>
prefix np: <http://www.nanopub.org/nschema#>
prefix npa: <http://purl.org/nanopub/admin/>
prefix npx: <http://purl.org/nanopub/x/>

select ?Property_noheader ?Property_label
       (group_concat(distinct replace(str(?textval), '[\\r\\n]+', ' '); separator='\\n') as ?Value_multi_noheader)
       (group_concat(?iri; separator=' ') as ?Link_multi_iri_noheader)
       (group_concat(replace(str(?iriLabel), '[\\r\\n]+', ' '); separator='\\n') as ?Link_label_multi)
where {
  {
    select ?ord ?Property_noheader ?Property_label ?textval ?iri (min(?iriLabelRaw) as ?iriLabel) where {
      values ?__pubkey_multi {}
      graph npa:graph {
        ?dnp npa:hasValidSignatureForPublicKeyHash ?__pubkey_multi ;
             (npx:introduces|npx:describes|npx:embeds) ?_partid_iri ;
             dct:created ?ddate ;
             np:hasAssertion ?da .
        filter not exists { ?inv npx:invalidates ?dnp ; npa:hasValidSignatureForPublicKeyHash ?__pubkey_multi . }
        filter not exists {
          ?dnp2 npa:hasValidSignatureForPublicKeyHash ?pk2 ;
                (npx:introduces|npx:describes|npx:embeds) ?_partid_iri ;
                dct:created ?ddate2 .
          filter not exists { ?inv2 npx:invalidates ?dnp2 ; npa:hasValidSignatureForPublicKeyHash ?pk2 . }
          filter(?ddate2 > ?ddate)
        }
      }
      {
        graph ?da { ?_partid_iri rdfs:label ?v . filter(lang(?v) = '') }
        bind(1 as ?ord) bind(rdfs:label as ?Property_noheader) bind('Name:' as ?Property_label)
        bind(str(?v) as ?textval)
      } union {
        graph ?da { ?_partid_iri rdfs:label ?v . filter(lang(?v) = 'nl-be') }
        bind(2 as ?ord) bind(rdfs:label as ?Property_noheader) bind('Name (Dutch):' as ?Property_label)
        bind(str(?v) as ?textval)
      } union {
        graph ?da { ?_partid_iri schema:alternateName ?v }
        bind(3 as ?ord) bind(schema:alternateName as ?Property_noheader) bind('Alternative names:' as ?Property_label)
        bind(if(lang(?v) = 'nl-be', concat(str(?v), ' (nl)'), str(?v)) as ?textval)
      } union {
        graph ?da { ?_partid_iri rdf:type ?iri }
        bind(4 as ?ord) bind(rdf:type as ?Property_noheader) bind('Type:' as ?Property_label)
        bind(replace(str(?iri), '^.*[/#]', '') as ?iriLabelRaw)
      } union {
        graph ?da { ?_partid_iri rdfs:subClassOf ?iri }
        optional { graph npa:graph { ?vnp npx:introduces ?iri ; np:hasAssertion ?vaa . } graph ?vaa { ?iri rdfs:label ?vlab . filter(lang(?vlab) = '') } }
        bind(5 as ?ord) bind(rdfs:subClassOf as ?Property_noheader) bind('Subclass of:' as ?Property_label)
        bind(coalesce(?vlab, replace(str(?iri), '^.*[/#]', '')) as ?iriLabelRaw)
      } union {
        graph ?da { ?_partid_iri pehterms:isMetaboliteOf ?iri }
        optional { graph npa:graph { ?vnp npx:introduces ?iri ; np:hasAssertion ?vaa . } graph ?vaa { ?iri rdfs:label ?vlab . filter(lang(?vlab) = '') } }
        bind(6 as ?ord) bind(pehterms:isMetaboliteOf as ?Property_noheader) bind('Is metabolite of:' as ?Property_label)
        bind(coalesce(?vlab, replace(str(?iri), '^.*[/#]', '')) as ?iriLabelRaw)
      } union {
        graph ?da { ?_partid_iri pehterms:isIsomerOf ?iri }
        optional { graph npa:graph { ?vnp npx:introduces ?iri ; np:hasAssertion ?vaa . } graph ?vaa { ?iri rdfs:label ?vlab . filter(lang(?vlab) = '') } }
        bind(7 as ?ord) bind(pehterms:isIsomerOf as ?Property_noheader) bind('Is isomer of:' as ?Property_label)
        bind(coalesce(?vlab, replace(str(?iri), '^.*[/#]', '')) as ?iriLabelRaw)
      } union {
        graph ?da { ?_partid_iri obo:RO_0000087 ?iri }
        bind(8 as ?ord) bind(obo:RO_0000087 as ?Property_noheader) bind('Has role:' as ?Property_label)
        bind(replace(str(?iri), '^.*[/#]', '') as ?iriLabelRaw)
      } union {
        graph ?da { ?_partid_iri skos:exactMatch ?iri }
        bind(9 as ?ord) bind(skos:exactMatch as ?Property_noheader) bind('External identifiers:' as ?Property_label)
        bind(replace(str(?iri), '^.*/', '') as ?iriLabelRaw)
      } union {
        graph ?da { ?_partid_iri pehterms:hasGroupLabel ?v }
        bind(10 as ?ord) bind(pehterms:hasGroupLabel as ?Property_noheader) bind('Group labels:' as ?Property_label)
        bind(str(?v) as ?textval)
      } union {
        graph ?da { ?_partid_iri pehterms:hasContextAlias ?ca . }
        optional { graph ?da { ?ca schema:alternateName ?caName } }
        optional { graph ?da { ?ca schema:identifier ?caType } }
        optional { graph ?da { ?ca pehterms:hasContext ?caCtx } }
        bind(11 as ?ord) bind(pehterms:hasContextAlias as ?Property_noheader) bind('Context aliases:' as ?Property_label)
        bind(concat(coalesce(str(?caName), '?'), coalesce(concat(' (', str(?caType), ')'), ''), coalesce(concat(' @ ', replace(str(?caCtx), '^.*/', '')), '')) as ?textval)
      } union {
        graph ?da { ?_partid_iri schema:comment ?v }
        bind(12 as ?ord) bind(schema:comment as ?Property_noheader) bind('Comment:' as ?Property_label)
        bind(str(?v) as ?textval)
      } union {
        graph ?da { ?_partid_iri dct:isPartOf ?iri }
        optional { graph npa:graph { ?vnp npx:introduces ?iri ; np:hasAssertion ?vaa . } graph ?vaa { ?iri rdfs:label ?vlab . filter(lang(?vlab) = '') } }
        bind(13 as ?ord) bind(dct:isPartOf as ?Property_noheader) bind('Part of:' as ?Property_label)
        bind(coalesce(?vlab, replace(str(?iri), '^.*[/#]', '')) as ?iriLabelRaw)
      } union {
        graph npa:graph { ?iri np:hasAssertion ?da . }
        bind(14 as ?ord) bind(npa:viaNanopub as ?Property_noheader) bind('Defined in:' as ?Property_label)
        bind(substr(replace(str(?iri), '^.*/np/', ''), 1, 10) as ?iriLabelRaw)
      }
    } group by ?ord ?Property_noheader ?Property_label ?textval ?iri
  }
}
group by ?ord ?Property_noheader ?Property_label
order by ?ord""" .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo orcid:0000-0002-1267-0234 .
}

sub:pubinfo {
  orcid:0000-0002-1267-0234 foaf:name "Tobias Kuhn" .
  
  this: dct:created "2026-07-15T06:44:19Z"^^xsd:dateTime;
    dct:creator orcid:0000-0002-1267-0234;
    dct:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:embeds sub:get-biochementity-info;
    npx:supersedes <https://w3id.org/np/RA-nCGvmh7Euq3SJlMWepvPMIHGoSMBBvvKIQOTiHXRC0>;
    rdfs:label "Get biochementity info";
    nt:wasCreatedFromProvenanceTemplate <https://w3id.org/np/RA7lSq6MuK_TIC6JMSHvLtee3lpLoZDOqLJCLXevnrPoU>;
    nt:wasCreatedFromPubinfoTemplate <https://w3id.org/np/RA0J4vUn_dekg-U1kK3AOEt02p9mT2WO03uGxLDec1jLw>;
    nt:wasCreatedFromTemplate <https://w3id.org/np/RAEFAt-QcFK0ZhqfvlsmS10BnzGJA0xwOICZXkO-ai87k> .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCwUtewGCpT5vIfXYE1bmf/Uqu1ojqnWdYxv+ySO80ul8Gu7m8KoyPAwuvaPj0lvPtHrg000qMmkxzKhYknEjq8v7EerxZNYp5B3/3+5ZpuWOYAs78UnQVjbHSmDdmryr4D4VvvNIiUmd0yxci47dTFUj4DvfHnGd6hVe5+goqdcwIDAQAB";
    npx:hasSignature "hwhqR6jKJuTs+eFfEhEfEo6Tr6zlb5LtvsdRKohl48Nha6FcR0FLNtLsuJsUqHG5Z9QehhddgT+rF8d+8soe7ZPa4i7QH2jQVSqmAjJHrxIl9ektgrsO9jZAQtP31isHUIb4cI6bOv4YF/7TMMVoe0dZmdsIeIUbaMZgBy+MT7g=";
    npx:hasSignatureTarget this:;
    npx:signedBy orcid:0000-0002-1267-0234 .
}