@prefix this: <https://w3id.org/np/RA_-AALlM1rIYcJRsFUrIfSb5KYSvjiHUZbQbN-cpeV6w> .
@prefix sub: <https://w3id.org/np/RA_-AALlM1rIYcJRsFUrIfSb5KYSvjiHUZbQbN-cpeV6w/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix mac: <https://w3id.org/spaces/mac/r/ontology/> .
@prefix npx: <http://purl.org/nanopub/x/> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  dct:contributor rdfs:label "has contributor" .
  
  dct:creator rdfs:label "has creator" .
  
  dct:isPartOf rdfs:label "is part of" .
  
  dct:license rdfs:label "data usage license" .
  
  dct:publisher rdfs:label "has publisher" .
  
  dct:references rdfs:label "references" .
  
  dct:source rdfs:label "has source" .
  
  dct:subject rdfs:label "has domain" .
  
  <http://purl.org/spar/cito/citesAsAuthority> rdfs:label "cites as authority" .
  
  rdf:type rdfs:label "is a" .
  
  rdfs:comment rdfs:label "has description" .
  
  rdfs:label rdfs:label "has the label" .
  
  <https://creativecommons.org/licenses/by/4.0/> rdfs:label "Attribution 4.0 International (CC BY 4.0)" .
  
  <https://doi.org/10.3389/fbinf.2025.1634111> rdfs:label "FAIR² data article (Frontiers in Bioinformatics)" .
  
  <https://doi.org/10.71728/hw56-vj34> rdfs:label "FAIR² Data Package DOI" .
  
  <https://w3id.org/fair/fip/terms/implements> rdfs:label "implements" .
  
  <https://w3id.org/fdof/ontology#FAIRDigitalObject> rdfs:label "FAIR Digital Object (FDO)" .
  
  <https://w3id.org/fdof/ontology#hasEncodingFormat> rdfs:label "has format" .
  
  <https://w3id.org/fdof/ontology#hasMetadata> rdfs:label "has its metadata in" .
  
  <https://w3id.org/fdof/ontology#materializes> rdfs:label "is a concrete materialization of" .
  
  sub:assertion a nt:AssertionTemplate;
    dct:description "Real-world detection of a SARS-CoV-2 Spike variant, as reported in GISAID. Carries the occurrence date and the collection location (GeoNames URI), and optionally the canonical GISAID accession. Links via mac:isObservationOf to the Spike RBD Variant FDO it observes, and optionally via mac:hasSurveillanceMethod to the surveillance system (Type 11 FDO). The nanopublication self-materializes (assertion graph is the FDO).";
    rdfs:label "Declaring a Real-World Occurrence (MAC FDT Type 2)";
    nt:hasNanopubLabelPattern "Real-world occurrence (${occurrenceDate})";
    nt:hasStatement sub:st0, sub:st1, sub:st2, sub:st3, sub:st4, sub:st5, sub:st5b, sub:st5c,
      sub:st5d, sub:st6, sub:st7, sub:st8, sub:st91, sub:st92, sub:st95, sub:st_d, sub:st_gi,
      sub:st_l, sub:st_obs, sub:st_oc, sub:st_pp, sub:st_sm;
    nt:hasTag "MAC" .
  
  sub:authority a nt:ExternalUriPlaceholder;
    rdfs:label "observation-specific authority (DOI or URL)" .
  
  sub:contact a nt:LiteralPlaceholder;
    rdfs:label "contact email" .
  
  sub:contributor a nt:AgentPlaceholder;
    rdfs:label "ORCID of contributor" .
  
  sub:creator a nt:AgentPlaceholder;
    rdfs:label "ORCID of creator";
    nt:hasDefaultValue nt:CREATOR .
  
  sub:description a nt:LongLiteralPlaceholder;
    rdfs:label "free-text description of this occurrence" .
  
  sub:domain a nt:RestrictedChoicePlaceholder;
    rdfs:label "domain";
    nt:possibleValuesFrom <https://w3id.org/np/RACXDZHEowTYDAzZvdmD0qIGpXZwY5ghMRBBlt6N8Iu5s> .
  
  sub:fdo a nt:IntroducedResource, nt:LocalResource, nt:UriPlaceholder;
    rdfs:label "full URI (e.g. handle.net) or short suffix for this occurrence FDO" .
  
  sub:fip a nt:GuidedChoicePlaceholder;
    rdfs:label "FAIR Implementation Profile";
    nt:possibleValuesFromApi "http://purl.org/nanopub/api/find_signed_things?type=https%3A%2F%2Fw3id.org%2Ffair%2Ffip%2Fterms%2FFAIR-Implementation-Profile&searchterm=" .
  
  sub:gisaidAccession a nt:LiteralPlaceholder;
    rdfs:label "canonical GISAID accession (EPI_ISL_XXXXXXX)";
    nt:hasRegex "^EPI_ISL_\\d+$" .
  
  sub:label a nt:LiteralPlaceholder;
    rdfs:label "label or name for this occurrence (e.g. \"Alpha first detected, UK Sept 2020\")" .
  
  sub:location a nt:ExternalUriPlaceholder;
    rdfs:label "GeoNames feature URI (e.g. https://sws.geonames.org/6269131/)" .
  
  sub:occurrenceDate a nt:LiteralPlaceholder;
    rdfs:label "GISAID-reported collection date" .
  
  sub:project a nt:GuidedChoicePlaceholder;
    rdfs:label "project";
    nt:possibleValuesFromApi "https://w3id.org/np/l/nanopub-query-1.1/api/RAFTZ8GqPOOJQOBcEo5IB8lg5vZCFiIyr_RVLKZDQBHMk/get-projects?searchterm=" .
  
  sub:publisher a nt:ExternalUriPlaceholder;
    rdfs:label "ROR of the publishing entity" .
  
  sub:st0 rdf:object <https://w3id.org/fdof/ontology#FAIRDigitalObject>;
    rdf:predicate rdf:type;
    rdf:subject sub:fdo .
  
  sub:st1 a nt:OptionalStatement;
    rdf:object sub:label;
    rdf:predicate rdfs:label;
    rdf:subject sub:fdo .
  
  sub:st2 a nt:OptionalStatement;
    rdf:object sub:description;
    rdf:predicate rdfs:comment;
    rdf:subject sub:fdo .
  
  sub:st3 rdf:object mac:RealWorldOccurrence;
    rdf:predicate rdf:type;
    rdf:subject sub:fdo .
  
  sub:st4 rdf:object nt:NANOPUB;
    rdf:predicate <https://w3id.org/fdof/ontology#hasMetadata>;
    rdf:subject sub:fdo .
  
  sub:st5 rdf:object sub:fdo;
    rdf:predicate <https://w3id.org/fdof/ontology#materializes>;
    rdf:subject nt:NANOPUB .
  
  sub:st5b rdf:object <https://www.iana.org/assignments/media-types/application/trig>;
    rdf:predicate <https://w3id.org/fdof/ontology#hasEncodingFormat>;
    rdf:subject nt:NANOPUB .
  
  sub:st5c rdf:object <https://creativecommons.org/licenses/by/4.0/>;
    rdf:predicate dct:license;
    rdf:subject nt:NANOPUB .
  
  sub:st5d rdf:object nt:NANOPUB;
    rdf:predicate <https://www.w3.org/ns/dcat#accessURL>;
    rdf:subject nt:NANOPUB .
  
  sub:st6 a nt:RepeatableStatement;
    rdf:object sub:creator;
    rdf:predicate dct:creator;
    rdf:subject sub:fdo .
  
  sub:st7 a nt:OptionalStatement, nt:RepeatableStatement;
    rdf:object sub:contributor;
    rdf:predicate dct:contributor;
    rdf:subject sub:fdo .
  
  sub:st8 rdf:object sub:contact;
    rdf:predicate <https://www.w3.org/ns/dcat#contactPoint>;
    rdf:subject sub:fdo .
  
  sub:st91 a nt:OptionalStatement;
    rdf:object sub:domain;
    rdf:predicate dct:subject;
    rdf:subject sub:fdo .
  
  sub:st92 rdf:object sub:publisher;
    rdf:predicate dct:publisher;
    rdf:subject sub:fdo .
  
  sub:st95 a nt:OptionalStatement;
    rdf:object sub:fip;
    rdf:predicate <https://w3id.org/fair/fip/terms/implements>;
    rdf:subject sub:fdo .
  
  sub:st_d rdf:object sub:occurrenceDate;
    rdf:predicate mac:hasOccurrenceDate;
    rdf:subject sub:fdo .
  
  sub:st_gi a nt:OptionalStatement;
    rdf:object sub:gisaidAccession;
    rdf:predicate mac:hasGISAIDAccession;
    rdf:subject sub:fdo .
  
  sub:st_l rdf:object sub:location;
    rdf:predicate mac:hasCollectionLocation;
    rdf:subject sub:fdo .
  
  sub:st_obs rdf:object sub:variant;
    rdf:predicate mac:isObservationOf;
    rdf:subject sub:fdo .
  
  sub:st_oc a nt:OptionalStatement, nt:RepeatableStatement;
    rdf:object sub:authority;
    rdf:predicate <http://purl.org/spar/cito/citesAsAuthority>;
    rdf:subject sub:fdo .
  
  sub:st_pp rdf:object sub:project;
    rdf:predicate dct:isPartOf;
    rdf:subject sub:fdo .
  
  sub:st_sm a nt:OptionalStatement;
    rdf:object sub:surveillanceMethod;
    rdf:predicate mac:hasSurveillanceMethod;
    rdf:subject sub:fdo .
  
  sub:surveillanceMethod a nt:ExternalUriPlaceholder;
    rdfs:label "surveillance method FDO referent URI" .
  
  sub:variant a nt:ExternalUriPlaceholder;
    rdfs:label "Spike RBD Variant FDO referent URI" .
  
  mac:RealWorldOccurrence rdfs:label "Real-World Occurrence" .
  
  mac:hasCollectionLocation rdfs:label "has collection location" .
  
  mac:hasGISAIDAccession rdfs:label "has GISAID accession number" .
  
  mac:hasOccurrenceDate rdfs:label "has occurrence date" .
  
  mac:hasSurveillanceMethod rdfs:label "has surveillance method" .
  
  mac:isObservationOf rdfs:label "is observation of" .
  
  <https://www.iana.org/assignments/media-types/application/trig> rdfs:label "TriG (RDF named-graph serialization)" .
  
  <https://www.w3.org/ns/dcat#accessURL> rdfs:label "has access URL" .
  
  <https://www.w3.org/ns/dcat#contactPoint> rdfs:label "has contact point" .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo orcid:0000-0001-8888-635X .
}

sub:pubinfo {
  this: dct:created "2026-05-27T20:07:27Z"^^xsd:dateTime;
    dct:creator orcid:0000-0001-8888-635X;
    dct:license <https://creativecommons.org/licenses/by/4.0/>;
    rdfs:label "Template: Declaring a Real-World Occurrence (MAC FDT Type 2)";
    nt:wasCreatedFromProvenanceTemplate <https://w3id.org/np/RA7lSq6MuK_TIC6JMSHvLtee3lpLoZDOqLJCLXevnrPoU>;
    nt:wasCreatedFromPubinfoTemplate <https://w3id.org/np/RA0J4vUn_dekg-U1kK3AOEt02p9mT2WO03uGxLDec1jLw>,
      <https://w3id.org/np/RAMEgudZsQ1bh1fZhfYnkthqH6YSXpghSE_DEN1I-6eAI>, <https://w3id.org/np/RARW4MsFkHuwjycNElvEVtuMjpf4yWDL10-0C5l2MqqRQ>,
      <https://w3id.org/np/RAukAcWHRDlkqxk7H2XNSegc1WnHI569INvNr-xdptDGI>;
    nt:wasCreatedFromTemplate <https://w3id.org/np/RA5reLVXOCPQFWr2UiCJb19ES7NwOpQRmudb17e2iB0c4> .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQD3w/IUb755GIzp3ueODYkgELhyq4Clygb5Kspge50xo+n8uC/IvXwi+ukRjEpdfX/JZ09yKUCJ2AMMr/QchrsP1Xhg9Q3fEZ4E12XqFd5jX00Qs0K5XZwjBaV8NdDTJW9I4gpcyh0cry7hSBAWHkXEkqbK+lQvR4UFAKejFq6u/wIDAQAB";
    npx:hasSignature "sH51YjFu9Txkfirzd1r/H+U+EiaSm3vbo64X56K652s98NAuOzrVfaRjTG2CnzyN4TX/BBufTTENfJHxh7kOTwt4cFgOZSKPgVdw7cisfrrTlbPIx03SFIzu9Jk+PenGlsQLb/mgEF07WfZf4IH90AZetQINh6Ust6lZWJA6EKY=";
    npx:hasSignatureTarget this:;
    npx:signedBy orcid:0000-0001-8888-635X .
}