Nanopublication

< Home

ID

https://w3id.org/np/RAdqJKFDuZl1FNq2MJJygbsXUdySuVODOA-0V18s0CQPk

Formats

.trig | .trig.txt | .jelly | .jelly.txt | .jsonld | .jsonld.txt | .nq | .nq.txt | .xml | .xml.txt

Content

@prefix this: <https://w3id.org/np/RAdqJKFDuZl1FNq2MJJygbsXUdySuVODOA-0V18s0CQPk> .
@prefix sub: <https://w3id.org/np/RAdqJKFDuZl1FNq2MJJygbsXUdySuVODOA-0V18s0CQPk/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix dct: <http://purl.org/dc/terms/> .
@prefix nt: <https://w3id.org/np/o/ntemplate/> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix orcid: <https://orcid.org/> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  sub:get-terms-pending-approval-of-an-ontology-from-space-members a <https://w3id.org/kpxl/grlc/grlc-query>;
    dct:description "The pending counterpart of 'Get the approved terms of an ontology from space members', and the type-generalised sibling of 'Get the classes pending approval of an ontology from space members'. It returns the terms (OWL classes, named individuals, object/datatype/annotation properties, and plain RDF properties) of the given ontology or vocabulary that are awaiting a curation decision: member-published, and neither approved nor explicitly member-disapproved, so disapproved terms appear in neither this listing nor the approved one. Because it spans several nanopub types it runs on the full repository (/repo/full) rather than a type-scoped endpoint. A term is included when its definition declares it part of the given resource via dct:isPartOf (or the legacy dct:partOf or schema:isPartOf), and the defining nanopublication was published by an admin, maintainer, or member of the space that maintains the resource; the maintaining space and its validated member public-key hashes are resolved server-side from the spaces repo (/repo/spaces), observers excluded. Each term URI appears once, kept from the latest (by nanopub timestamp, ties broken by nanopub URI) member-published definition, and the verdict is judged on that winning definition only, so publishing a new version of an approved term moves it back into this listing until it is approved again. A version counts as approved -- and is therefore excluded here -- when the newest non-invalidated approval/disapproval nanopublication targeting it is an npx:approvesOf signed by a current member+ of the maintaining space who is not the definition's own signer (self-approval never counts; the latest verdict wins across all publishers), or by default when its signing key belongs to a validated holder of the auto-approved helper role (https://w3id.org/np/RASGFRI3F5TtJ4GA4Yaed3esIpTF3pDyJLbpuvsqHzIXc/autoApprovedHelperRole) in the maintaining space with no outstanding member disapproval. The approval verdicts are resolved once per request by a self-contained sub-select wrapped in a SERVICE self-reference to /repo/full (so the planner evaluates it independently), federating to /repo/spaces for the approvers' member keys; the helper-role key hashes come from the spaces repo via the validated role instantiations carrying gen:hasRole, wrapped in an extra sub-select so the federated call is evaluated once rather than per result row. The type column gives the term's most specific declared kind: rdf:Property is only reported when no owl:ObjectProperty/owl:DatatypeProperty/owl:AnnotationProperty type is declared alongside it, and the type_label companion renders the local name, such as Class, NamedIndividual or ObjectProperty. The description column takes skos:definition, falling back to dct:description (which is what the named-individual definitions use). The status column is a multi-value literal listing the curation states that apply to the winning definition: \"deprecated\" (owl:DeprecatedClass or owl:DeprecatedProperty) and \"example\" (npx:ExampleNanopub), in that order; terms whose winning definition types them gen:WithdrawnTerm are excluded entirely. The approve_target/approval_choice and disapprove_target/disapproval_choice column pairs are action data rather than content: they let a view offer per-row approve and disapprove actions pre-filled with the row's nanopublication and npx:approvesOf or npx:disapprovesOf respectively -- two separate choice columns are needed because one mapping source column can only carry one value per row -- and the override_target column carries the row's nanopublication for an in-place re-edit action. The last_modified_by/last_modified columns give the signer and timestamp of the latest definition; the signer name is resolved from the trust repo (/repo/trust) or left blank.";
    dct:license <http://www.apache.org/licenses/LICENSE-2.0>;
    rdfs:label "Get the terms pending approval of an ontology from space members";
    <https://w3id.org/kpxl/grlc/endpoint> <https://w3id.org/np/l/nanopub-query-1.1/repo/full>;
    <https://w3id.org/kpxl/grlc/sparql> """prefix owl: <http://www.w3.org/2002/07/owl#>
prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>
prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
prefix dct: <http://purl.org/dc/terms/>
prefix np: <http://www.nanopub.org/nschema#>
prefix npa: <http://purl.org/nanopub/admin/>
prefix npx: <http://purl.org/nanopub/x/>
prefix skos: <http://www.w3.org/2004/02/skos/core#>
prefix schema: <https://schema.org/>
prefix gen: <https://w3id.org/kpxl/gen/terms/>
prefix foaf: <http://xmlns.com/foaf/0.1/>

select ?term ?term_label ?type ?type_label ?description ?status_multi
       ?last_modified_by (sample(?lmbl) as ?last_modified_by_label) ?last_modified
       (?np as ?override_target) ?approve_target ?approval_choice ?disapprove_target ?disapproval_choice ?np ?np_label where {
  {
    select ?term (sample(?term_label_) as ?term_label)
           (max(?typeRank) as ?typeWin)
           (coalesce(sample(?definition_), sample(?description_)) as ?description)
           (sample(?status_) as ?status_multi)
           (sample(?user) as ?last_modified_by) (sample(?date) as ?last_modified)
           (sample(?np_) as ?np) (\"^\" as ?np_label) where {
      {
        select ?term (max(?rank) as ?maxrank) where {
          {
            select ?np_ ?term ?a ?date ?pubkey where {
              values ?itemType { owl:Class owl:ObjectProperty owl:DatatypeProperty owl:AnnotationProperty owl:NamedIndividual rdf:Property }
              service <https://w3id.org/np/l/nanopub-query-1.1/repo/spaces> {
                select (group_concat(?mpk; separator=\" \") as ?memberPubkeys) where {
                  graph npa:graph { npa:thisRepo npa:hasCurrentSpaceState ?stateG . }
                  values ?_ontology_multi_iri {}
                  graph ?stateG {
                    ?_ontology_multi_iri npa:isMaintainedBy? ?space .
                    ?ri a gen:RoleInstantiation ; npa:forSpace ?space ; npa:forAgent ?agent ;
                        npa:hasRoleType ?rt .
                    filter(?rt in (gen:AdminRole, gen:MaintainerRole, gen:MemberRole))
                    ?acct a npa:AccountState ; npa:agent ?agent ; npa:pubkey ?mpk .
                  }
                }
              }
              graph npa:graph {
                ?np_ npx:hasNanopubType ?itemType .
                ?np_ npa:hasValidSignatureForPublicKeyHash ?pubkey .
                filter not exists { ?npx npx:invalidates ?np_ ; npa:hasValidSignatureForPublicKeyHash ?pubkey . }
                ?np_ dct:created ?date .
                ?np_ npx:introduces ?term .
                ?np_ np:hasAssertion ?a .
              }
              filter(contains(?memberPubkeys, ?pubkey))
            }
          }
          values ?_ontology_multi_iri {}
          graph ?a { ?term dct:isPartOf|dct:partOf|schema:isPartOf ?_ontology_multi_iri . }
          bind(concat(str(?date), \"|\", str(?np_)) as ?rank)
        } group by ?term
      }
      {
        select ?np_ ?term ?a ?date ?user ?pubkey ?itemType where {
          values ?itemType { owl:Class owl:ObjectProperty owl:DatatypeProperty owl:AnnotationProperty owl:NamedIndividual rdf:Property }
          service <https://w3id.org/np/l/nanopub-query-1.1/repo/spaces> {
            select (group_concat(?mpk; separator=\" \") as ?memberPubkeys) where {
              graph npa:graph { npa:thisRepo npa:hasCurrentSpaceState ?stateG . }
              values ?_ontology_multi_iri {}
              graph ?stateG {
                ?_ontology_multi_iri npa:isMaintainedBy? ?space .
                ?ri a gen:RoleInstantiation ; npa:forSpace ?space ; npa:forAgent ?agent ;
                    npa:hasRoleType ?rt .
                filter(?rt in (gen:AdminRole, gen:MaintainerRole, gen:MemberRole))
                ?acct a npa:AccountState ; npa:agent ?agent ; npa:pubkey ?mpk .
              }
            }
          }
          graph npa:graph {
            ?np_ npx:hasNanopubType ?itemType .
            ?np_ npa:hasValidSignatureForPublicKeyHash ?pubkey .
            filter not exists { ?npx npx:invalidates ?np_ ; npa:hasValidSignatureForPublicKeyHash ?pubkey . }
            ?np_ dct:created ?date .
            ?np_ npx:introduces ?term .
            ?np_ np:hasAssertion ?a .
            optional { ?np_ npx:signedBy ?user . }
          }
          filter(contains(?memberPubkeys, ?pubkey))
        }
      }
      values ?_ontology_multi_iri {}
      graph ?a { ?term a ?itemType ; dct:isPartOf|dct:partOf|schema:isPartOf ?_ontology_multi_iri . }
      bind(concat(str(?date), \"|\", str(?np_)) as ?rank)
      filter(?rank = ?maxrank)
      filter not exists { graph ?a { ?term a gen:WithdrawnTerm } }
      optional { graph ?a { ?term rdfs:label ?term_label_ . filter(lang(?term_label_) = \"\") } }
      optional { graph ?a { ?term skos:definition ?definition_ . } }
      optional { graph ?a { ?term dct:description ?description_ . } }
      bind(if(?itemType = rdf:Property, concat(\"1|\", str(?itemType)), concat(\"2|\", str(?itemType))) as ?typeRank)
      bind(replace(concat(
        if(exists { graph ?a { ?term a owl:DeprecatedClass } } || exists { graph ?a { ?term a owl:DeprecatedProperty } }, \"deprecated\\n\", \"\"),
        if(exists { graph npa:graph { ?np_ npx:hasNanopubType npx:ExampleNanopub } }, \"example\\n\", \"\")
      ), \"\\n$\", \"\") as ?status_)
      {
        select (group_concat(distinct ?apV; separator=\" \") as ?approvedNps)
               (group_concat(distinct ?disV; separator=\" \") as ?disapprovedNps) where {
          {
            select ?vTarget (max(concat(str(?vDate), \">\", str(?vNp), \">\", ?vMark)) as ?vWin) where {
              values ?_ontology_multi_iri {}
              service <https://w3id.org/np/l/nanopub-query-1.1/repo/spaces> {
                select (group_concat(?vpk; separator=\" \") as ?vMemberPubkeys) where {
                  graph npa:graph { npa:thisRepo npa:hasCurrentSpaceState ?vStateG . }
                  values ?_ontology_multi_iri {}
                  graph ?vStateG {
                    ?_ontology_multi_iri npa:isMaintainedBy? ?vSpace .
                    ?vRi a gen:RoleInstantiation ; npa:forSpace ?vSpace ; npa:forAgent ?vMember ;
                         npa:hasRoleType ?vRt .
                    filter(?vRt in (gen:AdminRole, gen:MaintainerRole, gen:MemberRole))
                    ?vAcct a npa:AccountState ; npa:agent ?vMember ; npa:pubkey ?vpk .
                  }
                }
              }
              service <https://w3id.org/np/l/nanopub-query-1.1/repo/full> {
                select distinct ?vTarget ?vNp ?vDate ?vPubkey ?vMark where {
                  values ?vType { owl:Class owl:ObjectProperty owl:DatatypeProperty owl:AnnotationProperty owl:NamedIndividual rdf:Property }
                  graph npa:graph {
                    ?vTarget npx:hasNanopubType ?vType ; npx:signedBy ?targetAgent .
                    ?vNp npx:signedBy ?vAgent ;
                         npa:hasValidSignatureForPublicKeyHash ?vPubkey ;
                         dct:created ?vDate ;
                         np:hasAssertion ?vA .
                    filter not exists { ?vInv npx:invalidates ?vNp ; npa:hasValidSignatureForPublicKeyHash ?vPubkey . }
                  }
                  graph ?vA { ?vAgent ?vPred ?vTarget . }
                  values ?vPred { npx:approvesOf npx:disapprovesOf }
                  filter(?vAgent != ?targetAgent)
                  bind(if(?vPred = npx:approvesOf, \"a\", \"d\") as ?vMark)
                }
              }
              filter(contains(?vMemberPubkeys, ?vPubkey))
            } group by ?vTarget
          }
          bind(if(strends(?vWin, \"a\"), str(?vTarget), \"\") as ?apV)
          bind(if(strends(?vWin, \"d\"), str(?vTarget), \"\") as ?disV)
        }
      }
      {
        select (sample(?helperPubkeys_) as ?helperPubkeys) where {
          service <https://w3id.org/np/l/nanopub-query-1.1/repo/spaces> {
            select (group_concat(?hpk; separator=\" \") as ?helperPubkeys_) where {
              graph npa:graph { npa:thisRepo npa:hasCurrentSpaceState ?hStateG . }
              values ?_ontology_multi_iri {}
              graph ?hStateG {
                ?_ontology_multi_iri npa:isMaintainedBy? ?hSpace .
                ?hRi a gen:RoleInstantiation ; npa:forSpace ?hSpace ; npa:forAgent ?hAgent ;
                     gen:hasRole <https://w3id.org/np/RASGFRI3F5TtJ4GA4Yaed3esIpTF3pDyJLbpuvsqHzIXc/autoApprovedHelperRole> .
                ?hAcct a npa:AccountState ; npa:agent ?hAgent ; npa:pubkey ?hpk .
              }
            }
          }
        }
      }
      bind(contains(concat(\" \", ?approvedNps, \" \"), concat(\" \", str(?np_), \" \")) as ?explicitApproved)
      bind(contains(concat(\" \", ?disapprovedNps, \" \"), concat(\" \", str(?np_), \" \")) as ?explicitDisapproved)
      bind(contains(?helperPubkeys, ?pubkey) as ?isAutoApproved)
      bind(?explicitApproved || (?isAutoApproved && !?explicitDisapproved) as ?isApproved)
      filter(!?isApproved && !?explicitDisapproved)
    } group by ?term
  }
  bind(iri(strafter(?typeWin, \"|\")) as ?type)
  bind(replace(str(?type), \"^.*[#/]\", \"\") as ?type_label)
  bind(str(?np) as ?approve_target)
  bind(str(npx:approvesOf) as ?approval_choice)
  bind(str(?np) as ?disapprove_target)
  bind(str(npx:disapprovesOf) as ?disapproval_choice)
  optional {
    service <https://w3id.org/np/l/nanopub-query-1.1/repo/trust> {
      select ?last_modified_by ?lmbl where {
        graph npa:graph { npa:thisRepo npa:hasCurrentTrustState ?tg . }
        graph ?tg { ?last_modified_by foaf:name ?lmbl . }
      }
    }
  }
}
group by ?term ?term_label ?type ?type_label ?description ?status_multi ?last_modified_by ?last_modified ?approve_target ?approval_choice ?disapprove_target ?disapproval_choice ?np ?np_label
order by ?term_label""" .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo orcid:0000-0002-1267-0234 .
}

sub:pubinfo {
  orcid:0000-0002-1267-0234 foaf:name "Tobias Kuhn" .
  
  this: dct:created "2026-08-26T06:57:57Z"^^xsd:dateTime;
    dct:creator orcid:0000-0002-1267-0234;
    dct:license <https://creativecommons.org/publicdomain/zero/1.0/>;
    npx:embeds sub:get-terms-pending-approval-of-an-ontology-from-space-members;
    rdfs:label "Get the terms pending approval of an ontology from space members";
    nt:wasCreatedFromProvenanceTemplate <https://w3id.org/np/RA7lSq6MuK_TIC6JMSHvLtee3lpLoZDOqLJCLXevnrPoU>;
    nt:wasCreatedFromPubinfoTemplate <https://w3id.org/np/RACJ58Gvyn91LqCKIO9zu1eijDQIeEff28iyDrJgjSJF8>,
      <https://w3id.org/np/RAukAcWHRDlkqxk7H2XNSegc1WnHI569INvNr-xdptDGI>;
    nt:wasCreatedFromTemplate <https://w3id.org/np/RAEFAt-QcFK0ZhqfvlsmS10BnzGJA0xwOICZXkO-ai87k> .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCwUtewGCpT5vIfXYE1bmf/Uqu1ojqnWdYxv+ySO80ul8Gu7m8KoyPAwuvaPj0lvPtHrg000qMmkxzKhYknEjq8v7EerxZNYp5B3/3+5ZpuWOYAs78UnQVjbHSmDdmryr4D4VvvNIiUmd0yxci47dTFUj4DvfHnGd6hVe5+goqdcwIDAQAB";
    npx:hasSignature "o9EeXLOZj3bQXqHDZLWifGMrGSk78MfsGrFVY5Ovz0AMCcliaL/0hCru1u1W+fFwRlTWfJaWeHpm2xc9nHIDHgJLgKlMpoOt5Rd+M7Mm7xdmbN0ukPyeGWtPmXvMReXbATkt1ra9BQIGW1XE5KRqkLq8TqezTGP7FVqFBlSZz/w=";
    npx:hasSignatureTarget this:;
    npx:signedBy orcid:0000-0002-1267-0234 .
}