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In order to obtain the concept id of the term that is going to be matched against the gene list, the workflow Get concept suggestions from term, needs to run first. matchConceptProfileList: the gene list we want to match (order) against a particular concept queryConceptProfileList: the concept (or gene list) we want to match the query against" } ], "http://schema.org/license": [ { "@id": "https://choosealicense.com/no-permission/" } ], "http://schema.org/name": [ { "@value": "Prioritize gene list related to a concept /list of concepts" } ], "http://schema.org/sdDatePublished": [ { "@value": "2014-02-25 16:12:14.228000+00:00" } ], "@type": [ "http://purl.org/wf4ever/wf4ever#Resource", "http://schema.org/MediaObject", "https://bioschemas.org/ComputationalWorkflow" ] }, { "@id": "https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/7aa50a5a-bc9a-4639-9e04-1fecc9bb5002", "http://schema.org/author": [ { "@id": "https://www.google.com/accounts/o8/id?id=AItOawlLcpRhy-5MtgIVFxuwLWcFFys5ZTC7w2c" } ], "http://schema.org/contentSize": [ { "@value": "203555", "@type": "http://www.w3.org/2001/XMLSchema#integer" } ], "http://schema.org/contentUrl": [ { "@value": "https://api.rohub.org/api/resources/7aa50a5a-bc9a-4639-9e04-1fecc9bb5002/download/" } ], "http://schema.org/creator": [ { "@id": "https://www.google.com/accounts/o8/id?id=AItOawlLcpRhy-5MtgIVFxuwLWcFFys5ZTC7w2c" } ], "http://schema.org/dateCreated": [ { "@value": "2014-02-25 16:06:54.756000+00:00" } ], "http://schema.org/dateModified": [ { "@value": "2022-03-25 09:07:55.632943+00:00" } ], "http://schema.org/description": [ { "@value": "This workflow annotates a comma separated gene list with a predefined concept set as for example Biological processes or Disease/syndrome. 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The workflow is using the anni web services" } ], "http://schema.org/license": [ { "@id": "https://choosealicense.com/no-permission/" } ], "http://schema.org/name": [ { "@value": "Annotate a gene list with Biological processes" } ], "http://schema.org/sdDatePublished": [ { "@value": "2014-02-25 16:06:54.756000+00:00" } ], "@type": [ "http://purl.org/wf4ever/wf4ever#Resource", "http://schema.org/MediaObject", "https://bioschemas.org/ComputationalWorkflow" ] }, { "@id": "https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/99ba79b8-8172-4026-93b2-affd7320122f", "http://schema.org/author": [ { "@id": "https://www.google.com/accounts/o8/id?id=AItOawlLcpRhy-5MtgIVFxuwLWcFFys5ZTC7w2c" } ], "http://schema.org/contentSize": [ { "@value": "69369", "@type": "http://www.w3.org/2001/XMLSchema#integer" } ], "http://schema.org/contentUrl": [ { "@value": "https://api.rohub.org/api/resources/99ba79b8-8172-4026-93b2-affd7320122f/download/" } ], "http://schema.org/creator": [ { "@id": "https://www.google.com/accounts/o8/id?id=AItOawlLcpRhy-5MtgIVFxuwLWcFFys5ZTC7w2c" } ], "http://schema.org/dateCreated": [ { "@value": "2014-02-26 13:14:06.663000+00:00" } ], "http://schema.org/dateModified": [ { "@value": "2022-03-25 09:07:56.525975+00:00" } ], "http://schema.org/description": [ { "@value": "This workflow takes two concept ids as input and returns the top ranking \"B\" concepts according to Swanson's ABC model of discovery, where the relationships AB and BC are known and reported in the literature, and the implicit relationship AC is a putative new discovery. It might also be the case that AC is already known. In that case AC does not represent a new discovery but will still be returned (see workflow example values). The B concepts are returned sorted on the percentage of the contributions of the individual concepts to the coherence score (the average of the inner product scores of all possible concept pairs within the group).\r\nThis workflow can be used together with other workflows in this pack: http://www.myexperiment.org/packs/282 for functional gene and SNP annotation and knowledge discovery." } ], "http://schema.org/license": [ { "@id": "https://choosealicense.com/no-permission/" } ], "http://schema.org/name": [ { "@value": "Explain concept scores" } ], "http://schema.org/sdDatePublished": [ { "@value": "2014-02-26 13:14:06.663000+00:00" } ], "@type": [ "http://purl.org/wf4ever/wf4ever#Resource", "http://schema.org/MediaObject", "https://bioschemas.org/ComputationalWorkflow" ] }, { "@id": "https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/dcaecdee-b61a-4d22-9610-be3770345a8e", "http://schema.org/author": [ { "@id": "https://www.google.com/accounts/o8/id?id=AItOawlLcpRhy-5MtgIVFxuwLWcFFys5ZTC7w2c" } ], "http://schema.org/contentSize": [ { "@value": "41692", "@type": "http://www.w3.org/2001/XMLSchema#integer" } ], "http://schema.org/contentUrl": [ { "@value": "https://api.rohub.org/api/resources/dcaecdee-b61a-4d22-9610-be3770345a8e/download/" } ], "http://schema.org/creator": [ { "@id": "https://www.google.com/accounts/o8/id?id=AItOawlLcpRhy-5MtgIVFxuwLWcFFys5ZTC7w2c" } ], "http://schema.org/dateCreated": [ { "@value": "2014-02-25 16:09:23.429000+00:00" } ], "http://schema.org/dateModified": [ { "@value": "2022-03-25 09:07:54.760474+00:00" } ], "http://schema.org/description": [ { "@value": "This workflow suggests concept ids that match the query term. 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