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"chromatin data interpretation." ROHub. 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https://www.google.com/accounts/o8/id?id=AItOawlLcpRhy-5MtgIVFxuwLWcFFys5ZTC7w2c https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/0390ff51-55a1-4af3-b99c-60ef059d0afc http://schema.org/contentSize 30787 https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/0390ff51-55a1-4af3-b99c-60ef059d0afc http://schema.org/contentUrl https://api.rohub.org/api/resources/0390ff51-55a1-4af3-b99c-60ef059d0afc/download/ https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/0390ff51-55a1-4af3-b99c-60ef059d0afc http://schema.org/creator https://www.google.com/accounts/o8/id?id=AItOawlLcpRhy-5MtgIVFxuwLWcFFys5ZTC7w2c https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/0390ff51-55a1-4af3-b99c-60ef059d0afc http://schema.org/dateCreated 2014-02-25 16:10:46.463000+00:00 https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/0390ff51-55a1-4af3-b99c-60ef059d0afc http://schema.org/dateModified 2022-03-25 09:07:52.840714+00:00 https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/0390ff51-55a1-4af3-b99c-60ef059d0afc http://schema.org/description This workflow lists all IDs and descriptions of the predefined concept set https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/0390ff51-55a1-4af3-b99c-60ef059d0afc http://schema.org/license https://choosealicense.com/no-permission/ https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/0390ff51-55a1-4af3-b99c-60ef059d0afc http://schema.org/name List Predefined Concept Sets https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/0390ff51-55a1-4af3-b99c-60ef059d0afc http://schema.org/sdDatePublished 2014-02-25 16:10:46.463000+00:00 https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/0390ff51-55a1-4af3-b99c-60ef059d0afc http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://purl.org/wf4ever/wf4ever#Resource 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https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/45b81758-2d25-4c33-87c8-cb2968fbd849 http://schema.org/creator https://www.google.com/accounts/o8/id?id=AItOawlLcpRhy-5MtgIVFxuwLWcFFys5ZTC7w2c https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/45b81758-2d25-4c33-87c8-cb2968fbd849 http://schema.org/dateCreated 2014-02-25 16:12:14.228000+00:00 https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/45b81758-2d25-4c33-87c8-cb2968fbd849 http://schema.org/dateModified 2022-03-25 09:07:51.492625+00:00 https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/45b81758-2d25-4c33-87c8-cb2968fbd849 http://schema.org/description This workflow can prioritize genes that are related to a specific concept, e.g. HTT. In order to obtain the concept id of the term that is going to be matched against the gene list, the workflow Get concept suggestions from term, needs to run first. matchConceptProfileList: the gene list we want to match (order) against a particular concept queryConceptProfileList: the concept (or gene list) we want to match the query against https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/45b81758-2d25-4c33-87c8-cb2968fbd849 http://schema.org/license https://choosealicense.com/no-permission/ https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/45b81758-2d25-4c33-87c8-cb2968fbd849 http://schema.org/name Prioritize gene list related to a concept /list of concepts https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/45b81758-2d25-4c33-87c8-cb2968fbd849 http://schema.org/sdDatePublished 2014-02-25 16:12:14.228000+00:00 https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/45b81758-2d25-4c33-87c8-cb2968fbd849 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https://api.rohub.org/api/resources/7a3f5ba3-b292-4c80-b0a1-76a15b20e50c/download/ https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/7a3f5ba3-b292-4c80-b0a1-76a15b20e50c http://schema.org/creator https://www.google.com/accounts/o8/id?id=AItOawlLcpRhy-5MtgIVFxuwLWcFFys5ZTC7w2c https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/7a3f5ba3-b292-4c80-b0a1-76a15b20e50c http://schema.org/dateCreated 2014-02-25 16:03:44.993000+00:00 https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/7a3f5ba3-b292-4c80-b0a1-76a15b20e50c http://schema.org/dateModified 2022-03-25 09:07:53.677489+00:00 https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/7a3f5ba3-b292-4c80-b0a1-76a15b20e50c http://schema.org/encodingFormat text/plain https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/7a3f5ba3-b292-4c80-b0a1-76a15b20e50c http://schema.org/license https://choosealicense.com/no-permission/ 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https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/7aa50a5a-bc9a-4639-9e04-1fecc9bb5002 http://schema.org/author https://www.google.com/accounts/o8/id?id=AItOawlLcpRhy-5MtgIVFxuwLWcFFys5ZTC7w2c https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/7aa50a5a-bc9a-4639-9e04-1fecc9bb5002 http://schema.org/contentSize 203555 https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/7aa50a5a-bc9a-4639-9e04-1fecc9bb5002 http://schema.org/contentUrl https://api.rohub.org/api/resources/7aa50a5a-bc9a-4639-9e04-1fecc9bb5002/download/ https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/7aa50a5a-bc9a-4639-9e04-1fecc9bb5002 http://schema.org/creator https://www.google.com/accounts/o8/id?id=AItOawlLcpRhy-5MtgIVFxuwLWcFFys5ZTC7w2c https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/7aa50a5a-bc9a-4639-9e04-1fecc9bb5002 http://schema.org/dateCreated 2014-02-25 16:06:54.756000+00:00 https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/7aa50a5a-bc9a-4639-9e04-1fecc9bb5002 http://schema.org/dateModified 2022-03-25 09:07:55.632943+00:00 https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/7aa50a5a-bc9a-4639-9e04-1fecc9bb5002 http://schema.org/description This workflow annotates a comma separated gene list with a predefined concept set as for example Biological processes or Disease/syndrome. To obtain the particular id for each concept set (e.g. "5" for Biological processes), the workflow listPredefinedConceptSets needs to run first. The workflow is using the anni web services https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/7aa50a5a-bc9a-4639-9e04-1fecc9bb5002 http://schema.org/license https://choosealicense.com/no-permission/ https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/7aa50a5a-bc9a-4639-9e04-1fecc9bb5002 http://schema.org/name Annotate a gene list with Biological processes https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/7aa50a5a-bc9a-4639-9e04-1fecc9bb5002 http://schema.org/sdDatePublished 2014-02-25 16:06:54.756000+00:00 https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/7aa50a5a-bc9a-4639-9e04-1fecc9bb5002 http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://purl.org/wf4ever/wf4ever#Resource https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/7aa50a5a-bc9a-4639-9e04-1fecc9bb5002 http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://schema.org/MediaObject https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/7aa50a5a-bc9a-4639-9e04-1fecc9bb5002 http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://bioschemas.org/ComputationalWorkflow https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/99ba79b8-8172-4026-93b2-affd7320122f http://schema.org/author https://www.google.com/accounts/o8/id?id=AItOawlLcpRhy-5MtgIVFxuwLWcFFys5ZTC7w2c https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/99ba79b8-8172-4026-93b2-affd7320122f http://schema.org/contentSize 69369 https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/99ba79b8-8172-4026-93b2-affd7320122f http://schema.org/contentUrl https://api.rohub.org/api/resources/99ba79b8-8172-4026-93b2-affd7320122f/download/ https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/99ba79b8-8172-4026-93b2-affd7320122f http://schema.org/creator https://www.google.com/accounts/o8/id?id=AItOawlLcpRhy-5MtgIVFxuwLWcFFys5ZTC7w2c https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/99ba79b8-8172-4026-93b2-affd7320122f http://schema.org/dateCreated 2014-02-26 13:14:06.663000+00:00 https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/99ba79b8-8172-4026-93b2-affd7320122f http://schema.org/dateModified 2022-03-25 09:07:56.525975+00:00 https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/99ba79b8-8172-4026-93b2-affd7320122f http://schema.org/description This workflow takes two concept ids as input and returns the top ranking "B" concepts according to Swanson's ABC model of discovery, where the relationships AB and BC are known and reported in the literature, and the implicit relationship AC is a putative new discovery. It might also be the case that AC is already known. In that case AC does not represent a new discovery but will still be returned (see workflow example values). The B concepts are returned sorted on the percentage of the contributions of the individual concepts to the coherence score (the average of the inner product scores of all possible concept pairs within the group). This workflow can be used together with other workflows in this pack: http://www.myexperiment.org/packs/282 for functional gene and SNP annotation and knowledge discovery. https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/99ba79b8-8172-4026-93b2-affd7320122f http://schema.org/license https://choosealicense.com/no-permission/ https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/99ba79b8-8172-4026-93b2-affd7320122f http://schema.org/name Explain concept scores https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/99ba79b8-8172-4026-93b2-affd7320122f http://schema.org/sdDatePublished 2014-02-26 13:14:06.663000+00:00 https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/99ba79b8-8172-4026-93b2-affd7320122f http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://purl.org/wf4ever/wf4ever#Resource https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/99ba79b8-8172-4026-93b2-affd7320122f http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://schema.org/MediaObject https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/99ba79b8-8172-4026-93b2-affd7320122f http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://bioschemas.org/ComputationalWorkflow https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/da150b5d-9fd0-46fc-9745-06460dbed48e http://schema.org/author https://www.google.com/accounts/o8/id?id=AItOawlLcpRhy-5MtgIVFxuwLWcFFys5ZTC7w2c https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/da150b5d-9fd0-46fc-9745-06460dbed48e http://schema.org/contentSize 67 https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/da150b5d-9fd0-46fc-9745-06460dbed48e http://schema.org/contentUrl https://api.rohub.org/api/resources/da150b5d-9fd0-46fc-9745-06460dbed48e/download/ https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/da150b5d-9fd0-46fc-9745-06460dbed48e http://schema.org/creator https://www.google.com/accounts/o8/id?id=AItOawlLcpRhy-5MtgIVFxuwLWcFFys5ZTC7w2c https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/da150b5d-9fd0-46fc-9745-06460dbed48e http://schema.org/dateCreated 2014-02-25 16:03:12.283000+00:00 https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/da150b5d-9fd0-46fc-9745-06460dbed48e http://schema.org/dateModified 2022-03-25 09:07:49.577479+00:00 https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/da150b5d-9fd0-46fc-9745-06460dbed48e http://schema.org/encodingFormat text/plain https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/da150b5d-9fd0-46fc-9745-06460dbed48e http://schema.org/license https://choosealicense.com/no-permission/ https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/da150b5d-9fd0-46fc-9745-06460dbed48e http://schema.org/name conclusions.txt https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/da150b5d-9fd0-46fc-9745-06460dbed48e http://schema.org/sdDatePublished 2014-02-25 16:03:12.283000+00:00 https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/da150b5d-9fd0-46fc-9745-06460dbed48e http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://purl.org/wf4ever/roterms#Conclusions https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/da150b5d-9fd0-46fc-9745-06460dbed48e http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://purl.org/wf4ever/wf4ever#Resource https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/da150b5d-9fd0-46fc-9745-06460dbed48e http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://schema.org/MediaObject https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/dcaecdee-b61a-4d22-9610-be3770345a8e http://schema.org/author https://www.google.com/accounts/o8/id?id=AItOawlLcpRhy-5MtgIVFxuwLWcFFys5ZTC7w2c https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/dcaecdee-b61a-4d22-9610-be3770345a8e http://schema.org/contentSize 41692 https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/dcaecdee-b61a-4d22-9610-be3770345a8e http://schema.org/contentUrl https://api.rohub.org/api/resources/dcaecdee-b61a-4d22-9610-be3770345a8e/download/ https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/dcaecdee-b61a-4d22-9610-be3770345a8e http://schema.org/creator https://www.google.com/accounts/o8/id?id=AItOawlLcpRhy-5MtgIVFxuwLWcFFys5ZTC7w2c https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/dcaecdee-b61a-4d22-9610-be3770345a8e http://schema.org/dateCreated 2014-02-25 16:09:23.429000+00:00 https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/dcaecdee-b61a-4d22-9610-be3770345a8e http://schema.org/dateModified 2022-03-25 09:07:54.760474+00:00 https://w3id.org/ro-id/d1b1d427-2332-428e-a205-726ac7a0e951/resources/dcaecdee-b61a-4d22-9610-be3770345a8e http://schema.org/description This workflow suggests concept ids that match the query term. 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