[ { "@id": "https://w3id.org/np/RAoFIpfeHRWfAA-_uJb0CoXjr6dCz1OLtypH-e1imfdQs/assertion", "@graph": [ { "@id": "https://w3id.org/np/RAoFIpfeHRWfAA-_uJb0CoXjr6dCz1OLtypH-e1imfdQs/find-gofair-qualified-vocab-onto", "http://purl.org/dc/terms/description": [ { "@value": "This query allows for searching for resources (FERs etc.) together with the info about whether GO FAIR qualified them." } ], "http://purl.org/dc/terms/license": [ { "@id": "http://www.apache.org/licenses/LICENSE-2.0" } ], "@type": [ "https://w3id.org/kpxl/grlc/grlc-query" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Find GO FAIR qualified things" } ], "https://w3id.org/kpxl/grlc/endpoint": [ { "@id": "https://w3id.org/np/l/nanopub-query-1.1/repo/full" } ], "https://w3id.org/kpxl/grlc/sparql": [ { "@value": "prefix rdfs: \r\nprefix np: \r\nprefix npa: \r\nprefix npx: \r\nprefix xsd: \r\nprefix dct: \r\nprefix fip: \r\n\r\nselect distinct ?thing ?label (group_concat(distinct ?type; separator=\" \") as ?types) ?description ?np ?date ?pubkey ?retraction ?newversion ?qualifier ?qualification_np (group_concat(distinct ?recommender; separator=\" \") as ?recommenders) (group_concat(distinct ?recommendation_np; separator=\" \") as ?recommendation_nps) (count(distinct ?recommender) as ?recommender_count) where {\r\n graph npa:graph {\r\n npa:hasValidSignatureForPublicKey ?curators_np_pk .\r\n ?latest_curators_np npa:hasValidSignatureForPublicKey ?curators_np_pk .\r\n filter not exists { ?latest_curators_npx npx:invalidates ?latest_curators_np ; npa:hasValidSignatureForPublicKey ?curators_np_pk . }\r\n ?latest_curators_np np:hasAssertion ?latest_curators_assertion .\r\n }\r\n graph npa:networkGraph {\r\n ?latest_curators_np (npx:supersedes)* .\r\n filter not exists { ?latest_curators_npxx npx:supersedes ?latest_curators_np }\r\n }\r\n \r\n graph npa:graph {\r\n values ?type { fip:Semantic-model fip:Structured-vocabulary }\r\n ?np npx:hasNanopubType ?type .\r\n ?np npa:hasValidSignatureForPublicKey ?pubkey .\r\n optional { ?retraction npx:retracts ?np ; npa:hasValidSignatureForPublicKey ?pubkey . }\r\n optional { ?newversion npx:supersedes ?np ; npa:hasValidSignatureForPublicKey ?pubkey . }\r\n ?np (npx:introduces|npx:describes) ?thing .\r\n ?np rdfs:label ?label .\r\n ?np dct:description ?description .\r\n ?np dct:created ?date .\r\n filter(str(?date) > \"2022\")\r\n }\r\n bind(concat(\" \",lcase(str(?label)),\" \",lcase(str(?description)),\" \") as ?text)\r\n filter( contains(?text, lcase(str(?_searchterm))) )\r\n\r\n optional {\r\n graph npa:graph {\r\n ?disapproval npa:hasValidSignatureForPublicKey ?dpubkey .\r\n }\r\n graph ?latest_curators_assertion {\r\n ?dpubkeys npx:hasPublicKey ?dpubkey .\r\n }\r\n graph npa:graph {\r\n filter not exists { ?disapproval_x npx:invalidates ?disapproval ; npa:hasValidSignatureForPublicKey ?dpubkey . }\r\n ?disapproval np:hasAssertion ?da .\r\n }\r\n graph ?da {\r\n ?dsomebody ( npx:disapproves-of | npx:disapprovesOf ) ?np .\r\n }\r\n } filter(!bound(?disapproval)) # Faster than \"filter not exists\" for some reason\r\n\r\n optional {\r\n graph npa:graph {\r\n ?qualification_np npx:hasNanopubType npx:qualifies .\r\n ?qualification_np npa:hasValidSignatureForPublicKey ?qpubkey .\r\n }\r\n graph ?latest_curators_assertion {\r\n ?qpubkeys npx:hasPublicKey ?qpubkey .\r\n }\r\n graph npa:graph {\r\n filter not exists { ?qualification_np_x npx:invalidates ?qualification_np ; npa:hasValidSignatureForPublicKey ?qpubkey . }\r\n ?qualification_np np:hasAssertion ?qa .\r\n }\r\n graph ?qa {\r\n ?qualifier npx:qualifies ?np .\r\n }\r\n }\r\n\r\n optional {\r\n graph npa:graph {\r\n ?recommendation_np npx:hasNanopubType fip:recommended-by .\r\n ?recommendation_np npa:hasValidSignatureForPublicKey ?rpubkey .\r\n }\r\n graph ?latest_curators_assertion {\r\n ?rpubkeys npx:hasPublicKey ?rpubkey .\r\n }\r\n graph npa:graph {\r\n filter not exists { ?recommendation_np_x npx:invalidates ?recommendation_np ; npa:hasValidSignatureForPublicKey ?rpubkey . }\r\n ?recommendation_np np:hasAssertion ?ra .\r\n }\r\n graph ?ra {\r\n ?thing fip:recommended-by ?recommender .\r\n }\r\n filter exists {\r\n graph npa:graph {\r\n ?fip_np npx:hasNanopubType fip:Reference-FAIR-Implementation-Profile .\r\n ?fip_np npa:hasValidSignatureForPublicKey ?fip_pubkey .\r\n }\r\n graph ?latest_curators_assertion {\r\n ?dpubkeys npx:hasPublicKey ?fip_pubkey .\r\n }\r\n graph npa:graph {\r\n filter not exists { ?fip_np_x npx:invalidates ?fip_np ; npa:hasValidSignatureForPublicKey ?fip_pubkey . }\r\n ?fip_np np:hasAssertion ?fip_np_a .\r\n }\r\n graph ?fip_np_a {\r\n ?fip fip:has-declaration-index ?index .\r\n }\r\n graph npa:graph {\r\n ?index np:hasAssertion ?index_a .\r\n }\r\n graph ?index_a {\r\n ?index npx:includesElement ?decl_np .\r\n }\r\n graph npa:graph {\r\n ?decl_np npx:hasNanopubType fip:FIP-Declaration .\r\n ?decl_np np:hasAssertion ?decl_np_a\r\n }\r\n graph ?decl_np_a {\r\n ?subj ?pred ?thing .\r\n values ?pred { fip:declares-current-use-of fip:declares-planned-use-of }\r\n ?decl fip:declared-by ?recommender .\r\n }\r\n }\r\n }\r\n}\r\ngroup by ?thing ?label ?description ?np ?date ?pubkey ?retraction ?newversion ?qualifier ?qualification_np\r\norder by desc(?recommender_count) asc(?label)" } ] } ] }, { "@id": "https://w3id.org/np/RAoFIpfeHRWfAA-_uJb0CoXjr6dCz1OLtypH-e1imfdQs/Head", "@graph": [ { "@id": "https://w3id.org/np/RAoFIpfeHRWfAA-_uJb0CoXjr6dCz1OLtypH-e1imfdQs", "http://www.nanopub.org/nschema#hasAssertion": [ { "@id": "https://w3id.org/np/RAoFIpfeHRWfAA-_uJb0CoXjr6dCz1OLtypH-e1imfdQs/assertion" } ], "http://www.nanopub.org/nschema#hasProvenance": [ { "@id": "https://w3id.org/np/RAoFIpfeHRWfAA-_uJb0CoXjr6dCz1OLtypH-e1imfdQs/provenance" } ], "http://www.nanopub.org/nschema#hasPublicationInfo": [ { "@id": "https://w3id.org/np/RAoFIpfeHRWfAA-_uJb0CoXjr6dCz1OLtypH-e1imfdQs/pubinfo" } ], "@type": [ "http://www.nanopub.org/nschema#Nanopublication" ] } ] }, { "@id": "https://w3id.org/np/RAoFIpfeHRWfAA-_uJb0CoXjr6dCz1OLtypH-e1imfdQs/pubinfo", "@graph": [ { "@id": "https://orcid.org/0000-0003-1062-5576", "http://xmlns.com/foaf/0.1/name": [ { "@value": "Gerhard Burger" } ] }, { "@id": "https://w3id.org/np/RAoFIpfeHRWfAA-_uJb0CoXjr6dCz1OLtypH-e1imfdQs", "http://purl.org/dc/terms/created": [ { "@value": "2025-07-28T13:43:49.164Z", "@type": "http://www.w3.org/2001/XMLSchema#dateTime" } ], "http://purl.org/dc/terms/creator": [ { "@id": "https://orcid.org/0000-0003-1062-5576" } ], "http://purl.org/dc/terms/license": [ { "@id": "https://creativecommons.org/licenses/by/4.0/" } ], "http://purl.org/nanopub/x/embeds": [ { "@id": "https://w3id.org/np/RAoFIpfeHRWfAA-_uJb0CoXjr6dCz1OLtypH-e1imfdQs/find-gofair-qualified-vocab-onto" } ], "http://purl.org/nanopub/x/wasCreatedAt": [ { "@id": "https://nanodash.knowledgepixels.com/" } ], "http://www.w3.org/ns/prov#wasDerivedFrom": [ { "@id": "https://w3id.org/np/RAm0_gAm9xiNz_RkvqqT4P0LRpNWn3JtC7SHoPRDYOUEY" } ], "https://w3id.org/np/o/ntemplate/wasCreatedFromProvenanceTemplate": [ { "@id": "https://w3id.org/np/RA7lSq6MuK_TIC6JMSHvLtee3lpLoZDOqLJCLXevnrPoU" } ], "https://w3id.org/np/o/ntemplate/wasCreatedFromPubinfoTemplate": [ { "@id": "https://w3id.org/np/RA0J4vUn_dekg-U1kK3AOEt02p9mT2WO03uGxLDec1jLw" }, { "@id": "https://w3id.org/np/RARW4MsFkHuwjycNElvEVtuMjpf4yWDL10-0C5l2MqqRQ" }, { "@id": "https://w3id.org/np/RAukAcWHRDlkqxk7H2XNSegc1WnHI569INvNr-xdptDGI" } ], "https://w3id.org/np/o/ntemplate/wasCreatedFromTemplate": [ { "@id": "https://w3id.org/np/RAEFAt-QcFK0ZhqfvlsmS10BnzGJA0xwOICZXkO-ai87k" } ] }, { "@id": "https://w3id.org/np/RAoFIpfeHRWfAA-_uJb0CoXjr6dCz1OLtypH-e1imfdQs/sig", "http://purl.org/nanopub/x/hasAlgorithm": [ { "@value": "RSA" } ], "http://purl.org/nanopub/x/hasPublicKey": [ { "@value": "MIGfMA0GCSqGSIb3DQEBAQUAA4GNADCBiQKBgQCKS0JLO/bGqK4GRv2E0dDCoFK5OAXtAsN8qrRCmaeMeBq/lp6gk/4vQ+/mbd2qZHt7bu0fbYWBmFwYDgxU3HqErq4mGo7JZ1UoKoNsEjq+pJCwv0sa5TsLfd1N/3xb0JLqouru63QrzS0VIPM0+X4Kar1SpZgxlpRapRc5NFZkUwIDAQAB" } ], "http://purl.org/nanopub/x/hasSignature": [ { "@value": "NTbc+aPsbQSoYbPwVj2ROBSxqBGeU/s6HS9wDUAYQrYNPPej6P7ka1veU7v4S4lzsOmMGYhKJpKEB0VSwtXOehu3KMt+NO0g1IC6ols2H6x+qR1j9tt53faJDeJCMmRamO1kRax5ozCNzad+52S2kTd6MuNwM90Kt/RQ4rP2ijc=" } ], "http://purl.org/nanopub/x/hasSignatureTarget": [ { "@id": "https://w3id.org/np/RAoFIpfeHRWfAA-_uJb0CoXjr6dCz1OLtypH-e1imfdQs" } ], "http://purl.org/nanopub/x/signedBy": [ { "@id": "https://orcid.org/0000-0003-1062-5576" } ] } ] }, { "@id": "https://w3id.org/np/RAoFIpfeHRWfAA-_uJb0CoXjr6dCz1OLtypH-e1imfdQs/provenance", "@graph": [ { "@id": "https://w3id.org/np/RAoFIpfeHRWfAA-_uJb0CoXjr6dCz1OLtypH-e1imfdQs/assertion", "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://orcid.org/0000-0003-1062-5576" } ] } ] } ]