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(human)\nrs603424\t CHUK\t path:hsa04920 Adipocytokine signaling pathway - Homo sapiens (human)\nrs603424\t CHUK\t path:hsa05120 Epithelial cell signaling in Helicobacter pylori infection - Homo sapiens (human)\nrs603424\t CHUK\t path:hsa05131 Shigellosis - Homo sapiens (human)\nrs603424\t CHUK\t path:hsa05142 Chagas disease (American trypanosomiasis) - Homo sapiens (human)\nrs603424\t CHUK\t path:hsa05145 Toxoplasmosis - Homo sapiens (human)\nrs603424\t CHUK\t path:hsa05160 Hepatitis C - Homo sapiens (human)\nrs603424\t CHUK\t path:hsa05162 Measles - Homo sapiens (human)\nrs603424\t CHUK\t path:hsa05166 HTLV-I infection - Homo sapiens (human)\nrs603424\t CHUK\t path:hsa05168 Herpes simplex infection - Homo sapiens (human)\nrs603424\t CHUK\t path:hsa05169 Epstein-Barr virus infection - Homo sapiens (human)\nrs603424\t CHUK\t path:hsa05200 Pathways in cancer - Homo sapiens (human)\nrs603424\t CHUK\t path:hsa05212 Pancreatic cancer - Homo sapiens (human)\nrs603424\t CHUK\t path:hsa05215 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Homo sapiens (human)\nrs541503\t PHGDH\t path:hsa01100 Metabolic pathways - Homo sapiens (human)\nrs541503\t HMGCS2\tpath:hsa00072 Synthesis and degradation of ketone bodies - Homo sapiens (human)\nrs541503\t HMGCS2\t path:hsa00280 Valine\nrs541503\t HMGCS2\t leucine and isoleucine degradation - Homo sapiens (human)\nrs541503\t HMGCS2\t path:hsa00650 Butanoate metabolism - Homo sapiens (human)\nrs541503\t HMGCS2\t path:hsa00900 Terpenoid backbone biosynthesis - Homo sapiens (human)\nrs541503\t HMGCS2\t path:hsa01100 Metabolic pathways - Homo sapiens (human)\nrs541503\t HMGCS2\t path:hsa03320 PPAR signaling pathway - Homo sapiens (human)" } ], "@type": [ "https://w3id.org/ro/terms/earth-science#Sentence" ], "https://w3id.org/ro/terms/earth-science#normScore": [ { "@value": "36.25815808556925" } ], "https://w3id.org/ro/terms/earth-science#score": [ { "@value": "100.0" } ] }, { "@id": "https://w3id.org/ro-id/097f159f-9d61-49e4-90b9-2648f5d4650f", "http://schema.org/name": [ { "@value": "FUNCTIONAL ANNOTATION OF SINGLE NUCLEOTIDE POLYMORHPISMS USING NEXT-GENERATION TEXT MINING AND CURATED METABOLIC PATHWAY DATABASES RESEARCH OBJECT" } ], "@type": [ "https://w3id.org/ro/terms/earth-science#Sentence" ], "https://w3id.org/ro/terms/earth-science#normScore": [ { "@value": "3.1182015953589555" } ], "https://w3id.org/ro/terms/earth-science#score": [ { "@value": "8.6" } ] }, { "@id": "https://w3id.org/ro-id/11febb27-41fb-43af-a55e-fe57dbef45bd", "http://schema.org/name": [ { "@value": "profile" } ], "@type": [ "https://w3id.org/ro/terms/earth-science#Lemma" ], "https://w3id.org/ro/terms/earth-science#normScore": [ { "@value": "2.772963604852686" } ], "https://w3id.org/ro/terms/earth-science#score": [ { "@value": "6.4" } ] }, { "@id": "https://w3id.org/ro-id/1463b613-f7f7-4f25-b7ad-e2bfddacb732/#enrichment_service-account-enrichment", "http://schema.org/name": [ { "@value": "service-account-enrichment" } ], "@type": [ "http://xmlns.com/foaf/0.1/Agent" ] }, { "@id": "https://w3id.org/ro-id/1463b613-f7f7-4f25-b7ad-e2bfddacb732/", "http://purl.org/pav/importedBy": [ { "@id": "mailto:service-account-generation-service" } ], "http://schema.org/author": [ { "@id": "https://www.google.com/accounts/o8/id?id=AItOawl4I-H_ask7ollkwUzMrjTDrgD2oj_Qu2Q" } ], "http://schema.org/contentSize": [ { "@value": "1419920", "@type": "http://www.w3.org/2001/XMLSchema#integer" } ], "http://schema.org/contentUrl": [ { "@value": "https://api.rohub.org/api/ros/1463b613-f7f7-4f25-b7ad-e2bfddacb732/crate/download/" } ], "http://schema.org/creator": [ { "@id": "https://www.google.com/accounts/o8/id?id=AItOawl4I-H_ask7ollkwUzMrjTDrgD2oj_Qu2Q" } ], "http://schema.org/dateCreated": [ { "@value": "2012-12-14 11:04:18.118000+00:00" } ], "http://schema.org/dateModified": [ { "@value": "2025-03-05 00:59:09.110748+00:00" } ], "http://schema.org/datePublished": [ { "@value": "2012-12-14 11:04:18.118000+00:00" } ], "http://schema.org/description": [ { "@value": "This research object implements the concept profile matching pipeline in the knowledge discovery tool Anni (http://biosemantics.org/anni), and adapts it to interpret the top SNPs from a GWAS. The underlying literature and concept profile databases are the same as the for the current version of Anni (2.1).\r\nThe pack consists of three main workflows (http://www.myexperiment.org/workflows/2999, http://www.myexperiment.org/workflows/2973, http://www.myexperiment.org/workflows/2972). Workflow 2999 returns a list of available concept sets to match the SNPs against. As an example, the concept set GO biological processes is used. Workflow 2973 consist of nine nested workflows (eight different components in the pack, for which one is used twice within the main workflow for different purposes). It reuses the SNP to Entrez gene identifier part of this workflow: http://www.myexperiment.org/workflows/3124, here implemented as a separate workflow (http://www.myexperiment.org/workflows/2971). Workflow 2973 takes a SNP ID and a set of GO biological processes as input together with a set of parameter settings. The outputs give the following information: 1) information about the GO biological process with the highest matching score against the SNPs, 2) if there are any co-occurring documents supporting this finding, and 3) the concepts contributing most to the match (intermediate concepts). The output parameters can be saved in Taverna as an Excel sheet together with the input parameters for interpretation. Documents supporting the relation with the intermediate concepts contributing most to the match can be retrieved with workflow http://www.myexperiment.org/workflows/2972." } ], "http://schema.org/encodingFormat": [ { "@value": "application/ld+json" } ], "http://schema.org/hasPart": [ { "@id": "https://w3id.org/ro-id/1463b613-f7f7-4f25-b7ad-e2bfddacb732/resources/26c813f7-e2cc-4a3e-9484-f90a5bf129d4" }, { "@id": "https://w3id.org/ro-id/1463b613-f7f7-4f25-b7ad-e2bfddacb732/resources/a7fdf0f5-ee3e-43c2-b183-8dd1a31057e4" } ], "http://schema.org/identifier": [ { "@value": "https://w3id.org/ro-id/1463b613-f7f7-4f25-b7ad-e2bfddacb732" } ], "http://schema.org/license": [ { "@id": "https://choosealicense.com/no-permission/" } ], "http://schema.org/name": [ { "@value": "Functional annotation of SNPs using next-generation text mining" } ], "@type": [ "http://purl.org/wf4ever/ro#ResearchObject", "http://purl.org/wf4ever/roevo#LiveRO", "http://schema.org/Dataset" ], 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