<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s> <http://www.nanopub.org/nschema#hasAssertion> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/Head> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s> <http://www.nanopub.org/nschema#hasProvenance> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/provenance> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/Head> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s> <http://www.nanopub.org/nschema#hasPublicationInfo> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/pubinfo> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/Head> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.nanopub.org/nschema#Nanopublication> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/Head> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/dataset> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/Dataset> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/dataset> <https://w3id.org/np/snakemake/describesWorkflow> <https://w3id.org/np/RAOBjU_aTRgW5zb2MFGvZPAXBZegQRzVoUU-aSGQFpxh4> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/dataset> <https://w3id.org/np/snakemake/generatedAt> "2026-03-17T16:56:38.233861+00:00"^^<http://www.w3.org/2001/XMLSchema#dateTime> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/dataset> <https://w3id.org/np/snakemake/hasSummary> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowsummary> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/dataset> <https://w3id.org/np/snakemake/hasWorkflowRun> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowrun> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/param-bwa_mem-1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/np/snakemake/Parameterization> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/param-bwa_mem-1> <https://w3id.org/np/snakemake/parameterIndex> "1"^^<http://www.w3.org/2001/XMLSchema#integer> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/param-bwa_mem-1> <https://w3id.org/np/snakemake/parameterValue> "-R '@RG\\tID:{sample}\\tSM:{sample}'" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/param-bwa_mem-2> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/np/snakemake/Parameterization> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/param-bwa_mem-2> <https://w3id.org/np/snakemake/parameterIndex> "2"^^<http://www.w3.org/2001/XMLSchema#integer> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/param-bwa_mem-2> <https://w3id.org/np/snakemake/parameterValue> "samtools" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/param-bwa_mem-3> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/np/snakemake/Parameterization> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/param-bwa_mem-3> <https://w3id.org/np/snakemake/parameterIndex> "3"^^<http://www.w3.org/2001/XMLSchema#integer> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/param-bwa_mem-3> <https://w3id.org/np/snakemake/parameterValue> "coordinate" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/param-bwa_mem-4> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/np/snakemake/Parameterization> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/param-bwa_mem-4> <https://w3id.org/np/snakemake/parameterIndex> "4"^^<http://www.w3.org/2001/XMLSchema#integer> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/param-bwa_mem-4> <https://w3id.org/np/snakemake/parameterValue> "" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/param-samtools_index-1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/np/snakemake/Parameterization> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/param-samtools_index-1> <https://w3id.org/np/snakemake/parameterIndex> "1"^^<http://www.w3.org/2001/XMLSchema#integer> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/param-samtools_index-1> <https://w3id.org/np/snakemake/parameterValue> "" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-all> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/np/snakemake/WorkflowRule> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-all> <https://w3id.org/np/snakemake/hasSoftwarePackage> "all" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-all> <https://w3id.org/np/snakemake/ruleName> "all" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-bcftools_call> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/np/snakemake/WorkflowRule> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-bcftools_call> <https://w3id.org/np/snakemake/hasOutput> "calls/all.vcf" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-bcftools_call> <https://w3id.org/np/snakemake/hasSoftwarePackage> "envs/bcftools.yml" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-bcftools_call> <https://w3id.org/np/snakemake/hasSoftwarePackage> "shell" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-bcftools_call> <https://w3id.org/np/snakemake/ruleName> "bcftools_call" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-bwa_mem> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/np/snakemake/WorkflowRule> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-bwa_mem> <https://w3id.org/np/snakemake/hasOutput> "sorted_reads/A.bam" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-bwa_mem> <https://w3id.org/np/snakemake/hasOutput> "sorted_reads/B.bam" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-bwa_mem> <https://w3id.org/np/snakemake/hasOutput> "sorted_reads/{sample}.bam" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-bwa_mem> <https://w3id.org/np/snakemake/hasParameterization> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/param-bwa_mem-1> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-bwa_mem> <https://w3id.org/np/snakemake/hasParameterization> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/param-bwa_mem-2> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-bwa_mem> <https://w3id.org/np/snakemake/hasParameterization> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/param-bwa_mem-3> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-bwa_mem> <https://w3id.org/np/snakemake/hasParameterization> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/param-bwa_mem-4> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-bwa_mem> <https://w3id.org/np/snakemake/hasSoftwarePackage> "envs/bwa.yml" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-bwa_mem> <https://w3id.org/np/snakemake/hasSoftwarePackage> "v8.1.1/bio/bwa/mem" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-bwa_mem> <https://w3id.org/np/snakemake/parametersJSON> "[\"-R '@RG\\\\tID:{sample}\\\\tSM:{sample}'\", \"samtools\", \"coordinate\", \"\"]" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-bwa_mem> <https://w3id.org/np/snakemake/ruleName> "bwa_mem" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-plot_positions> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/np/snakemake/WorkflowRule> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-plot_positions> <https://w3id.org/np/snakemake/hasOutput> "calls/positions.png" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-plot_positions> <https://w3id.org/np/snakemake/hasSoftwarePackage> "envs/matplotlib.yml" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-plot_positions> <https://w3id.org/np/snakemake/hasSoftwarePackage> "scripts/plot-positions.py" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-plot_positions> <https://w3id.org/np/snakemake/ruleName> "plot_positions" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-plot_quals> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/np/snakemake/WorkflowRule> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-plot_quals> <https://w3id.org/np/snakemake/hasOutput> "calls/quals.png" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-plot_quals> <https://w3id.org/np/snakemake/hasSoftwarePackage> "envs/matplotlib.yml" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-plot_quals> <https://w3id.org/np/snakemake/hasSoftwarePackage> "scripts/plot-quals.py" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-plot_quals> <https://w3id.org/np/snakemake/ruleName> "plot_quals" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-samtools_index> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/np/snakemake/WorkflowRule> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-samtools_index> <https://w3id.org/np/snakemake/hasOutput> "sorted_reads/A.bam.bai" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-samtools_index> <https://w3id.org/np/snakemake/hasOutput> "sorted_reads/B.bam.bai" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-samtools_index> <https://w3id.org/np/snakemake/hasOutput> "sorted_reads/{sample}.bam.bai" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-samtools_index> <https://w3id.org/np/snakemake/hasParameterization> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/param-samtools_index-1> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-samtools_index> <https://w3id.org/np/snakemake/hasSoftwarePackage> "envs/samtools.yml" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-samtools_index> <https://w3id.org/np/snakemake/hasSoftwarePackage> "v5.7.0/bio/samtools/index" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-samtools_index> <https://w3id.org/np/snakemake/parametersJSON> "[\"\"]" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-samtools_index> <https://w3id.org/np/snakemake/ruleName> "samtools_index" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowrun> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/np/snakemake/WorkflowRun> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowrun> <https://w3id.org/np/snakemake/configJSON> "{\"samples\": {\"A\": \"data/samples/A.fastq\", \"B\": \"data/samples/B.fastq\"}}" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowrun> <https://w3id.org/np/snakemake/configfile> "config/config.yaml" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowrun> <https://w3id.org/np/snakemake/dagSource> "Snakefile" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowrun> <https://w3id.org/np/snakemake/dagSource> "config/config.yaml" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowrun> <https://w3id.org/np/snakemake/dagSource> "envs/bcftools.yml" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowrun> <https://w3id.org/np/snakemake/dagSource> "envs/bwa.yml" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowrun> <https://w3id.org/np/snakemake/dagSource> "envs/matplotlib.yml" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowrun> <https://w3id.org/np/snakemake/dagSource> "envs/samtools.yml" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowrun> <https://w3id.org/np/snakemake/dagSource> "scripts/plot-positions.py" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowrun> <https://w3id.org/np/snakemake/dagSource> "scripts/plot-quals.py" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowrun> <https://w3id.org/np/snakemake/description> "" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowrun> <https://w3id.org/np/snakemake/hasRule> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-all> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowrun> <https://w3id.org/np/snakemake/hasRule> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-bcftools_call> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowrun> <https://w3id.org/np/snakemake/hasRule> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-bwa_mem> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowrun> <https://w3id.org/np/snakemake/hasRule> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-plot_positions> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowrun> <https://w3id.org/np/snakemake/hasRule> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-plot_quals> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowrun> <https://w3id.org/np/snakemake/hasRule> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/rule-samtools_index> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowrun> <https://w3id.org/np/snakemake/includedSnakefile> "/home/meesters/Documents/Teaching/snakemake-hpc-teaching-material/snakemake-tutorial/Snakefile" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowrun> <https://w3id.org/np/snakemake/mainSnakefile> "/home/meesters/Documents/Teaching/snakemake-hpc-teaching-material/snakemake-tutorial/Snakefile" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowrun> <https://w3id.org/np/snakemake/workflowMetadataJSON> "{}" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowsummary> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/np/snakemake/WorkflowSummary> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowsummary> <https://w3id.org/np/snakemake/numberOfJobs> "8"^^<http://www.w3.org/2001/XMLSchema#integer> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowsummary> <https://w3id.org/np/snakemake/numberOfResults> "2"^^<http://www.w3.org/2001/XMLSchema#integer> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/workflowsummary> <https://w3id.org/np/snakemake/numberOfRules> "6"^^<http://www.w3.org/2001/XMLSchema#integer> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> <http://www.w3.org/ns/prov#generatedAtTime> "2026-03-17T17:56:38.267634"^^<http://www.w3.org/2001/XMLSchema#dateTime> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/provenance> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/assertion> <http://www.w3.org/ns/prov#wasAttributedTo> <https://orcid.org/0000-0003-2408-7588> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/provenance> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s> <http://purl.org/dc/terms/created> "2026-03-17T16:56:38.233861+00:00"^^<http://www.w3.org/2001/XMLSchema#dateTime> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/pubinfo> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s> <http://purl.org/dc/terms/creator> <https://orcid.org/0000-0003-2408-7588> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/pubinfo> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s> <http://purl.org/nanopub/x/hasNanopubType> <https://schema.org/Dataset> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/pubinfo> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s> <http://www.w3.org/2000/01/rdf-schema#label> "Snakemake workflow metadata: https://w3id.org/np/RAOBjU_aTRgW5zb2MFGvZPAXBZegQRzVoUU-aSGQFpxh4" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/pubinfo> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s> <http://www.w3.org/ns/prov#generatedAtTime> "2026-03-17T17:56:38.267634"^^<http://www.w3.org/2001/XMLSchema#dateTime> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/pubinfo> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s> <http://www.w3.org/ns/prov#wasAttributedTo> <https://orcid.org/0000-0003-2408-7588> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/pubinfo> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/sig> <http://purl.org/nanopub/x/hasAlgorithm> "RSA" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/pubinfo> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/sig> <http://purl.org/nanopub/x/hasPublicKey> "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAkOFUnnRCp/k9/0ugvx8zQJ+Qc675W1Ug6F839+xvJ2QsSBu4iOJ1O2kJCmb3tALp3gJOt8sffRot3VrfY1hbgXxL7BVtDsfHHmXVff4YCeg5Ycdn5cDpLawDpAdYwMhK0LwIkZ3fwH9/o9JniYKXLV/jpF9bMKyiw/6tqlCHaMW1r8gzZzoxVIAakwvlABoY0iNoToLTlBRXEI4mLUNjDMnMwQgfh1KXMxMruNjW3wJyeDEIfa2ooAt0E4CRM9pkrEb37NzD9Jz8aSUFFY6BvIxF4ixK7rm6IUDvQ76LqXkEmgSeRv1kw7gnCe9wV/wHd0ZeW4heoBXmLHX3MvHfjwIDAQAB" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/pubinfo> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/sig> <http://purl.org/nanopub/x/hasSignature> "ZFhAdflCQRCWylgIb3dtDUPw1md1QASvL7su2QKzIjUbDEWiFW7bx3mlPfq5Mlil6aHjNH3RMeQ0S1/qB6Noe+M4Z3ZD/EBeHCeTRSdVB3/mhRjLnRX4rcitkeKw4vaaL7RND2AneAquAtAnT+qaK2pQmUvzh7W8M8dZJP1eCftab2g8QMhJOwQ1T1OQaHQHPFzwsUrLwcdp8hbt8wl6vNNzpt/ZQidfedlXB9H7xvZl1a6n+Ud0bnDGJ7UXSHyHMQeob1p+j+Ctgfwl5bB0qXiGH2FerOqc7/NHO2YnrmPbaB3wupfQsnDDPc3BLLWjoQKkyainOvMkFv8DNGfscg==" <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/pubinfo> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/sig> <http://purl.org/nanopub/x/hasSignatureTarget> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/pubinfo> .
<https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/sig> <http://purl.org/nanopub/x/signedBy> <https://orcid.org/0000-0003-2408-7588> <https://w3id.org/np/RAxKHcmY3zCuvwNk8whzmfZjoo_tER30Rxw8QZP2ctr3s/pubinfo> .