<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg> <http://www.nanopub.org/nschema#hasAssertion> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/Head> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg> <http://www.nanopub.org/nschema#hasProvenance> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/provenance> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/Head> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg> <http://www.nanopub.org/nschema#hasPublicationInfo> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/pubinfo> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/Head> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.nanopub.org/nschema#Nanopublication> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/Head> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/config-1> <http://purl.org/dc/terms/identifier> "config/config.yaml" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/config-1> <https://schema.org/text> "samples:\n  A: data/samples/A.fastq\n  B: data/samples/B.fastq\n\n" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/dataset> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/Dataset> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/dataset> <https://w3id.org/np/snakemake/describesWorkflow> <https://w3id.org/np/RAOBjU_aTRgW5zb2MFGvZPAXBZegQRzVoUU-aSGQFpxh4> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/dataset> <https://w3id.org/np/snakemake/generatedAt> "2026-03-17T19:26:28.393653+00:00"^^<http://www.w3.org/2001/XMLSchema#dateTime> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/dataset> <https://w3id.org/np/snakemake/hasWorkflowRun> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/workflowrun> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/param-bwa_mem-1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/np/snakemake/Parameterization> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/param-bwa_mem-1> <https://w3id.org/np/snakemake/parameterIndex> "1"^^<http://www.w3.org/2001/XMLSchema#integer> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/param-bwa_mem-1> <https://w3id.org/np/snakemake/parameterValue> "-R '@RG\\tID:{sample}\\tSM:{sample}'" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/param-bwa_mem-2> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/np/snakemake/Parameterization> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/param-bwa_mem-2> <https://w3id.org/np/snakemake/parameterIndex> "2"^^<http://www.w3.org/2001/XMLSchema#integer> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/param-bwa_mem-2> <https://w3id.org/np/snakemake/parameterValue> "samtools" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/param-bwa_mem-3> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/np/snakemake/Parameterization> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/param-bwa_mem-3> <https://w3id.org/np/snakemake/parameterIndex> "3"^^<http://www.w3.org/2001/XMLSchema#integer> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/param-bwa_mem-3> <https://w3id.org/np/snakemake/parameterValue> "coordinate" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/param-bwa_mem-4> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/np/snakemake/Parameterization> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/param-bwa_mem-4> <https://w3id.org/np/snakemake/parameterIndex> "4"^^<http://www.w3.org/2001/XMLSchema#integer> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/param-bwa_mem-4> <https://w3id.org/np/snakemake/parameterValue> "" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/param-samtools_index-1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/np/snakemake/Parameterization> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/param-samtools_index-1> <https://w3id.org/np/snakemake/parameterIndex> "1"^^<http://www.w3.org/2001/XMLSchema#integer> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/param-samtools_index-1> <https://w3id.org/np/snakemake/parameterValue> "" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-all> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/np/snakemake/WorkflowRule> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-all> <https://w3id.org/np/snakemake/hasInput> "calls/all.vcf" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-all> <https://w3id.org/np/snakemake/hasInput> "calls/positions.png" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-all> <https://w3id.org/np/snakemake/hasInput> "calls/quals.png" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-all> <https://w3id.org/np/snakemake/hasSoftwarePackage> "all" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-all> <https://w3id.org/np/snakemake/ruleName> "all" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-bcftools_call> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/np/snakemake/WorkflowRule> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-bcftools_call> <https://w3id.org/np/snakemake/hasOutput> "calls/all.vcf" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-bcftools_call> <https://w3id.org/np/snakemake/hasSoftwarePackage> "envs/bcftools.yml" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-bcftools_call> <https://w3id.org/np/snakemake/hasSoftwarePackage> "shell" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-bcftools_call> <https://w3id.org/np/snakemake/ruleName> "bcftools_call" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-bwa_mem> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/np/snakemake/WorkflowRule> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-bwa_mem> <https://w3id.org/np/snakemake/hasOutput> "sorted_reads/A.bam" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-bwa_mem> <https://w3id.org/np/snakemake/hasOutput> "sorted_reads/B.bam" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-bwa_mem> <https://w3id.org/np/snakemake/hasOutput> "sorted_reads/{sample}.bam" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-bwa_mem> <https://w3id.org/np/snakemake/hasParameterization> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/param-bwa_mem-1> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-bwa_mem> <https://w3id.org/np/snakemake/hasParameterization> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/param-bwa_mem-2> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-bwa_mem> <https://w3id.org/np/snakemake/hasParameterization> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/param-bwa_mem-3> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-bwa_mem> <https://w3id.org/np/snakemake/hasParameterization> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/param-bwa_mem-4> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-bwa_mem> <https://w3id.org/np/snakemake/hasSoftwarePackage> "envs/bwa.yml" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-bwa_mem> <https://w3id.org/np/snakemake/hasSoftwarePackage> "v8.1.1/bio/bwa/mem" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-bwa_mem> <https://w3id.org/np/snakemake/parametersJSON> "[\"-R '@RG\\\\tID:{sample}\\\\tSM:{sample}'\", \"samtools\", \"coordinate\", \"\"]" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-bwa_mem> <https://w3id.org/np/snakemake/ruleName> "bwa_mem" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-plot_positions> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/np/snakemake/WorkflowRule> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-plot_positions> <https://w3id.org/np/snakemake/hasOutput> "calls/positions.png" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-plot_positions> <https://w3id.org/np/snakemake/hasSoftwarePackage> "envs/matplotlib.yml" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-plot_positions> <https://w3id.org/np/snakemake/hasSoftwarePackage> "scripts/plot-positions.py" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-plot_positions> <https://w3id.org/np/snakemake/ruleName> "plot_positions" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-plot_quals> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/np/snakemake/WorkflowRule> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-plot_quals> <https://w3id.org/np/snakemake/hasOutput> "calls/quals.png" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-plot_quals> <https://w3id.org/np/snakemake/hasSoftwarePackage> "envs/matplotlib.yml" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-plot_quals> <https://w3id.org/np/snakemake/hasSoftwarePackage> "scripts/plot-quals.py" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-plot_quals> <https://w3id.org/np/snakemake/ruleName> "plot_quals" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-samtools_index> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/np/snakemake/WorkflowRule> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-samtools_index> <https://w3id.org/np/snakemake/hasOutput> "sorted_reads/A.bam.bai" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-samtools_index> <https://w3id.org/np/snakemake/hasOutput> "sorted_reads/B.bam.bai" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-samtools_index> <https://w3id.org/np/snakemake/hasOutput> "sorted_reads/{sample}.bam.bai" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-samtools_index> <https://w3id.org/np/snakemake/hasParameterization> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/param-samtools_index-1> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-samtools_index> <https://w3id.org/np/snakemake/hasSoftwarePackage> "envs/samtools.yml" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-samtools_index> <https://w3id.org/np/snakemake/hasSoftwarePackage> "v5.7.0/bio/samtools/index" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-samtools_index> <https://w3id.org/np/snakemake/parametersJSON> "[\"\"]" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-samtools_index> <https://w3id.org/np/snakemake/ruleName> "samtools_index" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/workflow-configuration> <http://www.w3.org/2000/01/rdf-schema#label> "from workflow configuration" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/workflow-configuration> <https://w3id.org/np/snakemake/hasConfigurationFile> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/config-1> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/workflowrun> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://w3id.org/np/snakemake/WorkflowRun> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/workflowrun> <https://w3id.org/np/snakemake/description> "" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/workflowrun> <https://w3id.org/np/snakemake/hasConfigurationSection> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/workflow-configuration> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/workflowrun> <https://w3id.org/np/snakemake/hasRule> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-all> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/workflowrun> <https://w3id.org/np/snakemake/hasRule> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-bcftools_call> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/workflowrun> <https://w3id.org/np/snakemake/hasRule> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-bwa_mem> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/workflowrun> <https://w3id.org/np/snakemake/hasRule> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-plot_positions> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/workflowrun> <https://w3id.org/np/snakemake/hasRule> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-plot_quals> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/workflowrun> <https://w3id.org/np/snakemake/hasRule> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/rule-samtools_index> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> <http://www.w3.org/ns/prov#generatedAtTime> "2026-03-17T20:26:28.425702"^^<http://www.w3.org/2001/XMLSchema#dateTime> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/provenance> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/assertion> <http://www.w3.org/ns/prov#wasAttributedTo> <https://orcid.org/0000-0003-2408-7588> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/provenance> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg> <http://purl.org/dc/terms/created> "2026-03-17T19:26:28.393653+00:00"^^<http://www.w3.org/2001/XMLSchema#dateTime> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/pubinfo> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg> <http://purl.org/dc/terms/creator> <https://orcid.org/0000-0003-2408-7588> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/pubinfo> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg> <http://purl.org/nanopub/x/hasNanopubType> <https://schema.org/Dataset> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/pubinfo> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg> <http://www.w3.org/2000/01/rdf-schema#label> "Snakemake workflow metadata: https://w3id.org/np/RAOBjU_aTRgW5zb2MFGvZPAXBZegQRzVoUU-aSGQFpxh4" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/pubinfo> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg> <http://www.w3.org/ns/prov#generatedAtTime> "2026-03-17T20:26:28.425702"^^<http://www.w3.org/2001/XMLSchema#dateTime> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/pubinfo> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg> <http://www.w3.org/ns/prov#wasAttributedTo> <https://orcid.org/0000-0003-2408-7588> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/pubinfo> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/sig> <http://purl.org/nanopub/x/hasAlgorithm> "RSA" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/pubinfo> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/sig> <http://purl.org/nanopub/x/hasPublicKey> "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAkOFUnnRCp/k9/0ugvx8zQJ+Qc675W1Ug6F839+xvJ2QsSBu4iOJ1O2kJCmb3tALp3gJOt8sffRot3VrfY1hbgXxL7BVtDsfHHmXVff4YCeg5Ycdn5cDpLawDpAdYwMhK0LwIkZ3fwH9/o9JniYKXLV/jpF9bMKyiw/6tqlCHaMW1r8gzZzoxVIAakwvlABoY0iNoToLTlBRXEI4mLUNjDMnMwQgfh1KXMxMruNjW3wJyeDEIfa2ooAt0E4CRM9pkrEb37NzD9Jz8aSUFFY6BvIxF4ixK7rm6IUDvQ76LqXkEmgSeRv1kw7gnCe9wV/wHd0ZeW4heoBXmLHX3MvHfjwIDAQAB" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/pubinfo> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/sig> <http://purl.org/nanopub/x/hasSignature> "CH5+xPEIySSnPKlNQRMR9lP1Se/eXTtiKMcPYx1gtzD8iXwM1mS7a1JxlBFvyzYoqTTXomqaqElWuDrHcGlBmuDqtusQfZIU7Yd0xfZRGdC7ErTjfmVnxEfyY3eAj2VeLNLjvD0xDknxC9UaEG6EVSiHcxBr9TYC+qd9YShSFq9/+A8LjGfUmGVyymw79h+qkcNGRMEqhdQ8h6OoZA/f6T8MCVRGMv2bwK6qaQCTHJTbRaNuzYNXVhfwzbZJscf/esPH+b8Df1kQuqeImE1kSrsRcSztCs0uCZvd7VGVwBP3e+/VALepCeXV+9dkBZwj8BZw0Vx8nc+LUDWlC2arJA==" <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/pubinfo> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/sig> <http://purl.org/nanopub/x/hasSignatureTarget> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/pubinfo> .
<https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/sig> <http://purl.org/nanopub/x/signedBy> <https://orcid.org/0000-0003-2408-7588> <https://w3id.org/np/RAz9ihRB2SrMYmy_tjuAPvff_suzlYkckGoRdStH8KKbg/pubinfo> .